RNA id: TCONS_00055182


Basic Information

Item Value
RNA id TCONS_00055182
length 3027
RNA type mRNA
GC content 0.47
exon number 22
gene id XLOC_028421
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2548783 ~ 2637710 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCATCGATGAAGTGGCAGTGATGGAGGCTAATACGGAATCAACAGCGAACTCCCTGCTGAAAGATGAGTGTTATTCTGATTTCCTCCAGGAGGATTTCGATGTGAAAACGTACACAGCTCAAGCCATTCATCATGCTGTGATTGCTGAGCAGCTGGCGAGGCTGGCAGAGGGCATCAGTCAGCTGGACAAAGAGCTGCACTGCCAGGTAGTGGCCAGACATGAGGATCTACTGGCTCAGGCTACAGGGATCGAGTCTCTAGAAGGTGTATTACAAATGATGCAGACCAGAATCTCAGCTCTCCAGAGCGCTGTGGACAGGATAAGGACCAAAATTGTTGACCCTTACAATAAGATAGTAGCACGGACAGCTCAGCTCGCCCGCTTAcagGTGGCGTGTGACCTGTTGAGAAGGATTATTCGCATCCTATACCTGAGCAAAAGACTGCAGGGGCAGCTGCAAGGGGGCAGCAGGGAAATCACTAAAGCTGCCCAGAGCCTCAATGAACTGGATTACCTGTCCCAGGGTGTGGATCTGTCGGGTATTGATGTCATAGAAAATGACCTGCTTTTTATAAGTCGAGCTCGTCTGGAGGTGGAAAACCAAGCCAAACGTTTACTGGAACAAGGCATGGAAATTCAGAATCCATCTCAGGTGGGGACAGCCCTACAAGTGTTTTACAACCTTGGAAATCTGAGAGAGACCATAAGAAGTGTGGTCGACGGATACAGGACATCTGTTCAAGAGAACGTCGTTAATGCCTTAGACATTAAGGTCCTTACTCAGCCTTCCAACACCAGAGGTGCCCCTGGCAGAGCAGTCATGCCCACTCCTGGAAACACAGCTGCATTTCGAGCTGCTCTTTGGACGAATTTGGAGAAACTAATGGACCAGATCTGTGCCGCGTGTGGTCAGGTTCAGCACCTGCAGAAGGTTCTAACAAAAAAGAGGGATCCAGTGACTCACGTGTGCTTCATCGATGAGATCATCAAGGATGGGCAGCCTGACATCTTGCACACCTTCTGGAGTTCAGTCACTCAGACGCTCTCCGAGGAGCTACAGAAAGCCACAGCTGCATCAACCTTCCTAAAGCAGGCTCTGGAAGGAGAGTATCCCAAGCTCTTGAGGCTTTATAATGAGCTGTGGAAGCGGCTGCAGCAATACAGTGCGAGCATACAGGGGGCGCTAGTGAGCAGTGGTGCAGGGCTTGATGTGGAACTGCCAGCAACAGAGAATGATACTGAAGATCTGTTCACACACGCCAAACCAGATTATGATCCAGAGAAGGATCTAAAGGACTCTCTTCAGCCATATGAAGCAGCTTACCTATCCAAGTCTTTATCCCGCCTCTTTGACCCCATCAACCTTGTGTTCCCTCAAGGGGGTCGAAACCCACCCTCTAATGATGAACTGGACAGCATTATAAAAACAATAGCCAGTGAGCTGAATGTTGCATCAGTGGATTCCGGCCTCACGATTGCAGTGGCCAAGAACGCCGCCAAGACGGTGCAGCTCTTCTGCGTCAAGTCGGAGCAGTTGCTGTGTACTCAGGGGGATGCAAGTCAGGTGATCGGACCCCTAACGGAGGGCCAGAGGAGAAACATTGCCGTTGTGAACTCTCTTTTCCGCTTGCAGCAAGCTGTGGCTAAGGTTATATCCGGACTGGGCAGTTTTCCTCTAGCAGCAGAACAATCGCTCACAGCATCTTTAGAGGCGGTTCAAGCACTGATGAGCAGTGCCGTTCAGCCTCTACTGAATTCTGTTACAGACTCTGTCGAAGCGATACTTATTACTATGCATCAGGAGGATTTCTCTAGTCCTTTACCTGCGGGTGGCCGTCCGGATGTGCCATGCTCTCTGTACATGCGTGAGCTGCAGGGCTTTATTGCACGCGTGATGAATGACTACTTCCGCCCGCTGCAGTGTCTGGACTTCTTGTATGATAGTACGGAGAAAATCGCCCAGCGTGCCATAACTCTGTTTATCCGGCATGCCAGCCTCCTGCGTCCACTCGGAGAGGGTGGGAAGATGAGGTTGGCTGCGGACTTTGCTCAGATGGAGTTAGCCGTGGCTCCTCTCTGCAGACGAGTGTCAGACTTGGGCAAAGCGTACCGTCTGCTGCGCTCTTTCAGGCCGCTGCTGTTTCAAACGAATGAGCACATCGCTAGCAGTCAAGCACTAGGAGATTTGATTCCCTACAGCACCATATTGCATTTCATGTTCACTCGTGCCCCGGCTGAACTCAAATCCCCACATCAGAGAGCGGAGTGGTCAATCTCTCGCTATTCTCAGTGGTTGGATGACCATTCATCAGAGAAGGACCGTCTCACTCTTATTAGAGGCGCGCTGGAGGCATATGTGCAGTCTGTCCGAGCCAGGCAGGGAAAGGAGTTTGCTCCGGTGTATCCCATCATGCTCCAGATGCTGCAGAAAGCCACAAGCGCATCATAAAACCTGCAAATAGAGTCgtcatattaaaatattgttcATTATAGTTGATGATAATACTACACTCAGTCTTTATATACATtagtttttgatttgtttatactgggtttaaagggatagttcacccaaaaataaagattctgtcatttactcatgctTGTTTCTTTCTTTGAATATTTACTGTTTACTCTCCTTTAAGtttttataaacctttatgacttcTGTTAAAGACattctgaaaaatgctggaaacctgtaaccattggctttcctactatggaagtcaatggttactggttttcagcattcttcaaaatatcttcttttgtgttcaacagactaaATGAAACTCAGGTTAATAGGGTTAAGGTTCAGGTTAATAGGCTAAAGGTTAATAACAACTTAAGGGAGAGTGAATAgtaagtaaattttaattttagggtgCACTATCTCTTTAATAAGACTAACAAATctacatatattcatatttttgggTTTGCTGGGTGCATCAGAGTGATTTGGTAAGCACATGATGTCAATGTGTAAATTCTGATTAAATAATCTCATCTCAATCACAAA

Function

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041210-47 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIi. Orthologous to human COG5 (component of oligomeric golgi complex 5).

Ensembl:

ensembl_id ENSDART00000021953

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057988 lncRNA downstream 69063 2445757 ~ 2479720 (-) False XLOC_028418
TCONS_00057989 lncRNA downstream 69063 2447839 ~ 2479720 (-) True XLOC_028418
TCONS_00057309 lncRNA downstream 151376 2392072 ~ 2397407 (-) False XLOC_028417
TCONS_00055164 lncRNA downstream 496275 2045406 ~ 2052508 (-) False XLOC_028411
TCONS_00057987 lncRNA downstream 573719 1974147 ~ 1975064 (-) True XLOC_028408
TCONS_00057310 lncRNA upstream 26458 2664168 ~ 2666870 (-) True XLOC_028422
TCONS_00057990 lncRNA upstream 613064 3250774 ~ 3257564 (-) True XLOC_028427
TCONS_00057991 lncRNA upstream 668435 3306145 ~ 3308415 (-) True XLOC_028428
TCONS_00057992 lncRNA upstream 754511 3392221 ~ 3405250 (-) False XLOC_028430
TCONS_00055199 lncRNA upstream 758612 3396322 ~ 3405050 (-) True XLOC_028430
TCONS_00055179 mRNA downstream 3438 2530841 ~ 2545345 (-) False XLOC_028420
TCONS_00055180 mRNA downstream 3473 2541497 ~ 2545310 (-) True XLOC_028420
TCONS_00055177 mRNA downstream 22849 2513102 ~ 2525934 (-) False XLOC_028419
TCONS_00055178 mRNA downstream 22849 2513104 ~ 2525934 (-) True XLOC_028419
TCONS_00055176 mRNA downstream 22867 2511629 ~ 2525916 (-) False XLOC_028419
TCONS_00055184 mRNA upstream 37188 2674898 ~ 2727573 (-) False XLOC_028423
TCONS_00055186 mRNA upstream 37414 2675124 ~ 2727563 (-) False XLOC_028423
TCONS_00055187 mRNA upstream 37475 2675185 ~ 2719128 (-) False XLOC_028423
TCONS_00055188 mRNA upstream 67993 2705703 ~ 2727491 (-) True XLOC_028423
TCONS_00055189 mRNA upstream 115142 2752852 ~ 2867461 (-) False XLOC_028424
TCONS_00055166 other downstream 386059 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 1599941 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 1740330 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 1863364 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055185 other upstream 37396 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 1854856 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 1908499 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 2292701 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 2732346 5370056 ~ 5371622 (-) True XLOC_028470

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_02548050_02596039.mRNA True 3765 mRNA 0.47 27 CI01000066 2547740 ~ 2596419 (-)