RNA id: TCONS_00055184


Basic Information

Item Value
RNA id TCONS_00055184
length 2719
RNA type mRNA
GC content 0.50
exon number 15
gene id XLOC_028423
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2674898 ~ 2727573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCCATCCAGCGGCTTCAAAGCAGAACAAACTATCTCACCTctcaggaagaagaagaaaaaatacaacTACAAGACTGACGTCAAAAAGATTAAACTGTTCGGACGCATCGAGCCGAACGCAGCACAATCGGATGTGAGTGGAAGTGTTAGGAAACACCTCCAGGACCAAGTGCCTTTTCCTCGTCTCCGGCAAGCCTGTGGGAAGTTTtttctccctcacacacacatgatCTGCTCCAAACACACTCGTTTTGGACCACAGGGGACTCTTATGTATCCATAGATTGTATAACAGACGCAATCGGGATCGGATATACGCGTACGGAGCGCGCGGTTTGGTGAGTAGGAGTGCATGCATAAATGCCAAGGAACTGCATGAAAGAGTCATCATCTCCCAAGGAAAACGAGATCTTTCTGTGGAGGATGGATCTGCCCAACAAGGAAAGACGGTCACCGGAAAACAGCCCAAGCTCCAGTCGGCGCTGTTGCTCAAGCTTCAAGATGTTCCTCGTGGCCTTGTCCTTCGCCTATTTCTCCAAGGCTTTATCCGGGAGCTATATGAAAAGCACAATAACTCAGCTGGAAAGACGCTTCGACATCCCCAGTTACTTAATAGGTGTCATTGACGGCAGCTTTGAAATAGGCAACTTGTTAGTGATCGCCTTTGTGAGTTACTTTGGTGCCAAACTTCACCGTCCGAAAATCATCGCCATCGGCTGCCTGTTGATGTCACTCGGGACGTTTCTCATCGCTTTGCCCCATTTCATAATCGGCCGATATAAGTTTGAGACGTCGATCCGCTTGTCTGTAAACTCCAGCAGCAGCCTCTCTCCGTGTTCACTGAGCTCTGCTGAACCCAGCACATCTTCAGTGCCCAGCACAGGCTGTGAACACGAGTCTCGGTTGTCGATGTGGATTTATGTGTTTCTGGGGAATATCCTGCGTGGGATTGGAGAGACTCCAGTGCAGCCGCTGGGAATCTCCTACATCGATGATCACGCTCTGGAGGAGAACGCAGCTTTCTACATTGGATGTGTCCAGACTATCTCCGTCATCGGGCCGGTTTTCGGGTATCTGCTGGGCTCCGTCTGTGCCAAGATATACGTGGACATTGGGTTTGTCAACATGGAGAGCATCAGCATCACTCCAGGAGACGCGCGCTGGGTCGGCGCCTGGTGGCTAGGCTACCTGATTGCCGGATTCATTACCCTGCTTTCAGCCGTGCCCTTCTGGTTCCTGCCCAAGTCTTTGCCACTGCCAGAGAGAAGACTGAGCAAATACTCTCCGGAGCGCAACAGCTTCATCAAAGACTCGGCTCTGCTGGAGCACAAATACCAGGCAGACGAGCCGGCTAACTTCCTGGAAATGGCCAAAGACTTTTTGCCCACACTGAGGTCTCTCCTGGGAAACCCGGTCTACTTTCTGTATCTGTGCGTGACCATCATCCAGTTCAACTCACTGATCGGCATGGTCACATATAAACCAAAATACATCGAGCAGCATTACGGACAGTCCGCATCCAAAGCCAACTTCCTCATGGGAGTTATCAACATCCCAGCCGTAGCCTTGGGAATGTTTTCGGGCGGCGTGATCATGAAGAAGTTCAAGCTGAGCATCATGGGAGCAGCCAAGTTTGCGTTGGGAACGTCTCTGCTGGGCTATTTTCTGTCTCTCTTCTTCTTCAGCATGGGCTGTGAAAACGCCAGCGTGGCTGGAATCACCATGTCCTACAACGGGACGGAGAGTCTGTTTATGGCGGACGGCTCTCTGCGAGCGTCCTGCAACGCAGCCTGTCATTGTCCTGAAAAAAACTGGGACCCGGTGTGCGGAGAAGACGGCCTCACCTACGTGTCCCCGTGCCTGGCTGGATGCCGGACGTCCCACGGCTCAGGAATGGACACGGTGTTTGAGCAGTGCAGTTGTATAGGAGTGGGGAATCAGACAGCCACCGCAGGCCAATGCAACAACAGAGAAAGCTGCCATCGCATTTTCCCGTACTTCCTGGCTCTGTCCGTCATCACTTCCTTCATTATATCACTAGGAGGAACGCCAGGATACATGCTGCTCATCAGATGCATCAAACCTCAGCTGAAGTCTCTAGCGTTGGGTTTTCACACTCTGACCACACGTACTCTGGCAGGGATTCCAGCTCCGATATATTTCGGGGCCATCATCGACACCACCTGTCTGAAATGGGGACACAAGAAGTGTGGTGGAAGAGGAGCCTGTCGAATCTACAACACCGCGGCCTACAGCGTATCtgggcctgacgttgggtttGCGCACCGTTTCCTTCTTCCTGTGTATCCTGGGGTTGTTGGTTTTGCGACGGCACGTTCAGAAGCAGGAGCGCAGCACAATGGTGAACGGAGGATCAGCGGCAGCCGGAGAACTGCAGGCGCTCAGAAAAGAAGAAAACAACAGCTGTAACTCAGAGCAGTGTCCACAAAACACAGATTATGACCCGGAGCGGGAGACGCGACTGTGACACTCgcattgagagaaaaaaaaaacggccGCGACGCCTGATTTTATGAGTTCCACTTTCTATCGAACCCATGTAAATGATgtgaaatactgaaaaaaatctgttgttttgatATAGTAGAACTATTTCTTGAATGTACATGATGTTTGGGTTAAAAAAAGATGAAGAATGTCTTAAAAACTACCTAATCTGTTTGAAGATGCTTTAATAAGTGTCTTAACGTCAAGAC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0043252 sodium-independent organic anion transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015347 sodium-independent organic anion transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-50 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in bilirubin metabolic disorder. Orthologous to several human genes including SLCO1C1 (solute carrier organic anion transporter family member 1C1).

Ensembl:

ensembl_id ENSDART00000134442

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057310 lncRNA downstream 8028 2664168 ~ 2666870 (-) True XLOC_028422
TCONS_00057988 lncRNA downstream 195178 2445757 ~ 2479720 (-) False XLOC_028418
TCONS_00057989 lncRNA downstream 195178 2447839 ~ 2479720 (-) True XLOC_028418
TCONS_00057309 lncRNA downstream 277491 2392072 ~ 2397407 (-) False XLOC_028417
TCONS_00055164 lncRNA downstream 622390 2045406 ~ 2052508 (-) False XLOC_028411
TCONS_00057990 lncRNA upstream 523201 3250774 ~ 3257564 (-) True XLOC_028427
TCONS_00057991 lncRNA upstream 578572 3306145 ~ 3308415 (-) True XLOC_028428
TCONS_00057992 lncRNA upstream 664648 3392221 ~ 3405250 (-) False XLOC_028430
TCONS_00055199 lncRNA upstream 668749 3396322 ~ 3405050 (-) True XLOC_028430
TCONS_00057993 lncRNA upstream 680138 3407711 ~ 3415152 (-) True XLOC_028431
TCONS_00055182 mRNA downstream 37188 2548783 ~ 2637710 (-) False XLOC_028421
TCONS_00055183 mRNA downstream 37188 2629776 ~ 2637710 (-) True XLOC_028421
TCONS_00055181 mRNA downstream 37209 2548783 ~ 2637689 (-) False XLOC_028421
TCONS_00055179 mRNA downstream 129553 2530841 ~ 2545345 (-) False XLOC_028420
TCONS_00055180 mRNA downstream 129588 2541497 ~ 2545310 (-) True XLOC_028420
TCONS_00055189 mRNA upstream 25279 2752852 ~ 2867461 (-) False XLOC_028424
TCONS_00055190 mRNA upstream 25279 2752852 ~ 2868112 (-) True XLOC_028424
TCONS_00055191 mRNA upstream 195626 2923199 ~ 2945306 (-) False XLOC_028425
TCONS_00055192 mRNA upstream 199256 2926829 ~ 2945306 (-) True XLOC_028425
TCONS_00055193 mRNA upstream 220490 2948063 ~ 3023182 (-) False XLOC_028426
TCONS_00055166 other downstream 512174 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 1726056 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 1866445 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 1989479 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055220 other upstream 1764993 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 1818636 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 2202838 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 2642483 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 3709191 6436764 ~ 6451732 (-) False XLOC_028490

Expression Profile

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