RNA id: TCONS_00055157


Basic Information

Item Value
RNA id TCONS_00055157
length 1728
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_028409
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1921011 ~ 1930024 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAGTGTAAATGATGGAAATATCTGTGACGTTCCTCCTCGCTGGATGTCTGATACAAGgTGTTTTATGTGGCTTCAGTATCAGTCTGCCAGAGAAAGTAGAAGCTCTAGAAGGATCCTGTGTTTTTATACCCTGCACATTCAATATTGATGAAGATTATAAAGATGATCTCACTGATACTGCAAAGAGATTATGGTATAAAGATGGAAAACCTGCAGTTTTGGTGTTTGACTCCAGCAGCCCTGACAGTGGACAGTTAAAAGGAGAAATATTTGGCAAAGCTACAGAGAAAAGGTGCAGCACTCGCTTCGATAATCTCAAACTAACAGACAGTGGCTCATATTACTTGAGATTAGAAGGCAGCGGTAGACTTCAATATAACTACATGAAACCCCAACACTCCTATGTTGAAATTGTGGTCAAAGcgtCTCCACCCAATCCCACAGTGCTTCTGTTTCAGGATCAGCAGGAGGTGATGGAGGTGACGGAGGGAAAATCAGTGACTCTGAGCTGCTTTAAGATCTTCTGTCCGTCTCTTCCATCATCTCTCACATGGAGCTCCAGTCCTGAACACCTCATCAATGCAAACATCCCAAAACTGCAGCATCAAAACCAAACACATTACTACTCTGACCTGATGTTCACTGTAACTCATCATCATCACAGAGCTGAATTCACCTGCACTGCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAAACACACTGAAGGAGACCTGAAACCCCCAACTGGACCAAACCTGACCATCATCAACATCAACCGTTCTCACAGTGGACGATACTACTGTAGAGCTGGAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTATCCTCCAGAAAAACCCTCTGTTCATAAATACGATGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGCGAACTACAGCTGGTACAGACACACTGAAGGAGACCTTGAACCACTGACCGGACCAAACCTGACCATCAGCAACATCAACCGGTCTCACAGTGAACGATATTACTGTAAAGCTGAAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTTTCCACCCAAAATCTCTAGCTCTTGTAGCCAAAACGACAcactcatctgtgtctgtaaggTTGACGGGAATCCTCTGCCTAAACTACAGTGGCGTCTGTCTGGAAAAGTTCTCAATTCCACTGAAGAAATGCAGATAAGTGAGCAAACTATAGGAAACAAGAGCTTGGAGAGCATCCTGAGCATCCGTCAGTCTCTCTCAGACTCATCAGTCCTGCAGTGTTGGACTGCAAACGCTCACGGATCCGCCAGCCACCAGTTTCAGCACATCACAACAACACCACACACAGGTCTCCATCCTGCATATGTACTGCTGGGATTCGCTGTAGGAGCATCACTCGTCCTGATCTTCTGTGTTCTGACCGTCTGCAATGAACGAAAAAAGTCTAGAAAACTTTTAGAAAGCAGACGAGACGACGCATCTGAACTCATTCTGACTGAAAGGAAAACCTTGCTGTCGTCCACATTGATCACGTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000134417

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057308 lncRNA downstream 4445 1915786 ~ 1916566 (-) False XLOC_028408
TCONS_00057984 lncRNA downstream 65240 1848660 ~ 1855771 (-) True XLOC_028406
TCONS_00055154 lncRNA downstream 81847 1831738 ~ 1839164 (-) True XLOC_028405
TCONS_00057982 lncRNA downstream 661270 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00057983 lncRNA downstream 686775 1223164 ~ 1234236 (-) True XLOC_028394
TCONS_00057986 lncRNA upstream 12009 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00057987 lncRNA upstream 44123 1974147 ~ 1975064 (-) True XLOC_028408
TCONS_00055164 lncRNA upstream 115382 2045406 ~ 2052508 (-) False XLOC_028411
TCONS_00057309 lncRNA upstream 462048 2392072 ~ 2397407 (-) False XLOC_028417
TCONS_00057988 lncRNA upstream 515733 2445757 ~ 2479720 (-) False XLOC_028418
TCONS_00055156 mRNA downstream 6783 1880180 ~ 1914228 (-) True XLOC_028407
TCONS_00055155 mRNA downstream 12832 1878573 ~ 1908179 (-) False XLOC_028407
TCONS_00055152 mRNA downstream 81659 1825839 ~ 1839352 (-) False XLOC_028405
TCONS_00055153 mRNA downstream 81819 1827012 ~ 1839192 (-) False XLOC_028405
TCONS_00055151 mRNA downstream 96175 1821637 ~ 1824836 (-) True XLOC_028404
TCONS_00055158 mRNA upstream 58436 1988460 ~ 2036620 (-) False XLOC_028410
TCONS_00055159 mRNA upstream 59465 1989489 ~ 2014406 (-) True XLOC_028410
TCONS_00055160 mRNA upstream 111043 2041067 ~ 2059233 (-) False XLOC_028411
TCONS_00055161 mRNA upstream 115108 2045132 ~ 2052687 (-) False XLOC_028411
TCONS_00055162 mRNA upstream 115108 2045132 ~ 2059296 (-) False XLOC_028411
TCONS_00055131 other downstream 972169 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 1112558 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 1235592 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 130500 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 745082 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 2562542 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 2616185 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3000387 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

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