RNA id: TCONS_00055152


Basic Information

Item Value
RNA id TCONS_00055152
length 3416
RNA type mRNA
GC content 0.39
exon number 14
gene id XLOC_028405
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1825839 ~ 1839352 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTTCTACCTTTTTCTTTAGGACAGTCAAAAATTACACCATGAAAAAATCCTCGTCGACATATAACATCAAGTCcttctttaaaatgataattttttttataaaacatctataattaataaaatttctAATTAAAAATCACTTATTCCTTGTTTTGATTGACCGATGGCGTGACGTCATAGCTGTGCGCCGCAGTGACGACGGCAGCCTAGAGAATCCTCGTGTTGTGTCATTTTATCACTATAAACATACACAAATCAGTCATGAGCGCTCAAATAACGTGTGTCGGATGGGTGAAGCGTGGAGTCGCCAAAGAAACGCCGGATAAAGTAAGTGTCCTCCGCGATCGTGTTCAAACTGCATGTTTCTGTGGATCTGCACACGTGTTTGGGGTTTTAACGCGAATAAAATCATCATCACAGGTGGAGCTGAGCAAAGAAGAGCTGCAGCGCATCATTTCAGAGGCCAAAGAGGAGTTAAGGGATCgagatgaagaggaggaggaagatgagGCTGATGAAGGTGTGGTCAGTGGTCTGGATAGTAAAGAAGAGGCTTCAGCTCCTGCGACTGTTGAAGaaggaataaaaaagaaagaggaTGGAAATGAGGAAGACGATGAGCTTGCAGAGTATGACCTAGACAAGTATGATGAAGAGGACATCGCTACATCAAATCTTGGAGACAGTTTAGCAGGATTGACTGTCTTTGGCACCAATGAAGAGGATCCATACGTCACCATCAAAGACAccGATCAGTACGAGCGTGAGGATTTTCAGATTAAACCCACTGATAACCTGATTTTGGCTGGGCGAGCTGAGAAAGAATGCTGCAATCTGGAGATTCATgtgTATAATTCAGAAGAAGACTCTCTATATGTGCACCATGACATCCTGCTGCCCGCGTATCCCCTGTGTGTGGAGTGGCTGAACTTTGACCCAAACCCAGAAGAACAACAAGGGAATTACGCAGCCGTGGGAAACATGACGCCTGTGATTGACGTTTGGGATCTAGATGTTGTCGACTGTTTAGAACCGGCTTTTTCACTCGGCagcaagaaagagaaaaagaagaagaagaaagccAAGAAGGCTGCAGAGCCCATTGAAGGCCACACAGATGCTGTGCTGGACCTGTCCTGGAACAGACTGGTCAGGAATGTTCTAGCGAGCGCGTCTGCGGATGAGACGGTGATACTGTGGGATCTGGAGAAAGGCAAACCAGCGGCAACACTCGCCAAACACACTGATAAGGTTCAGACGCTGAAGTTCCACCCATTTGAGGCTCAAACTCTCATCAGTGGATCATTTGACAAGTCTGTGATCCTGTACGATTGTCGCAGTCCAGATGACAGCCACCGGATCTGGCGCTTCAGTGGTCAAGTTGAGAGAGTTACCTGGGACCATTTCTCTCCATGTAACTTCCTGGCGAGTACAGAAGACGGCTTCATTTATTGTCTGGACGCTCGATCTGATAAACCCGTGTTCACACTGAGAGCTCATGATGGAGAGGTGTCAGGAATGGACCTGAGCAGTCAGATCCGCGGCTGTCTGGTCACATGTTCAGCTGACAAACATGTGAAAATCTGGGACATTCTGGGAAACAAACCCAACCTGATCCACTCCAGAGACATGAAGATGggtgtGTTATTCTGTGGCTCCTGCTGTCCGGATCTGCCATTCGTCTATGcgtttggaggacaaagggaagGACTGCGTGTCTGGGACATCAGCGATGTGGCTGCCGTTGCGGAGGTTTTCGGCAGCCGGGAGCGATTGGTGGCTAACACAGTGTCTGGAGCATCCAGCAGTGACATGGATGTCTCTTAATCATCAACAAACCAACAACAATACACTGAATTACTGAAGACTGAGAATCACAGGCCACTGCTTCATAATCAATGACGTGAACAGCAGAAGTCCTGATTTATCAGATGGAGTGTGATGGCAGGTTTCTCACTATGTTTATTTGATATATGAATAGTGTATATATCAAATGTCTGACACCGAACACACAGTGCTATCCTTAAAGAGGGAATGTATGTCTTTTCTAAGCTTACAGGTTGCAACTTGCTCTCCATATTTCCTCTTTTTAGGAAGTGTATAAAGATTTGCGATTAATTCTTATGCTGATTTTCCATGTCTGGGAGTGTGGAATTGCTGTTGTTTTAGAAATGGCAGTAAATAAAACGATGGATTACACAGATTATGGTCTTGTTTTGTATTCAGGAATGCTTATTAATGAATTTAAgtcatcattaattattttttgattgtttgttttactCGTTTATGTTTTtacatgtataaaatgtatttttaagtgtcagttttagttattttagcaCATCAACTTTAAAAAGTATAACTTTCTGTTGTGAGAACAACAGAATTTCATCGTTTCTTACCTGACGGTAACTCTCCGACCCTTCAGTAACTTTCACTCACTTCAGCATTGGAAAACATGTATATCCAcctataaaagataaataaataaatgtataaaactgacattataaaaataaacattatataaaacaaagttaaacttttgtaaaaattaaccatttgtattttaatatttcaatatacagttgaagtcagaattattagccccccctatttatttttttccatgttttctgtttaacagagcagattttctcaacacatttctaatcataatagttttaataactcatctctaataactgatttattttatctttgccatgatgacagtaaataatatttgactagatatttttcaagacacttgtatatagcttaaagtgacatttaaaggcttaactaggcaggttagggtaattaggcaagttattgtacaacgatggtttgttctgtagactatcggaaaaaaatagccttaaaaggctaataattttgtccttaaaatggtgtttaaaaaattaaaaactgattttattccagccaaaataaaacaaatcagactttctccagaagaaaaaatattatcagacacactgtgaaaatttctttgctctgttaaacatcatttaggaaatatttttaaaagaaactcaaaggggggctaataattctgactttagctgtaaATATTTGTGGCATATTGATTACAATTTGTTTATAACCACAGTTTATAACAATTAACacgattattttttattattaaattaacaaaaacttTAAACCAATATGTTTTTGTGGTAACCACAGTTTCACTTAATGGTTGCAATGGTTAACATATTTTGACTTGGTCAGTAATAACTTATACAGTAAAGGCACATTTTCATAAGGGAAGTTTGTGTTGGCACCTtaattcctgtttttttttatcccaaTGTTTAAGACACATGTAATAATTAAATCGTTTCCCATAACATTTAAGGTTGTTATGACTTTTTTCTGATacaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-1049 Predicted to be active in nucleus. Orthologous to human PWP1 (PWP1 homolog, endonuclein).

Ensembl:

ensembl_id ENSDART00000189215

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057982 lncRNA downstream 566098 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00057983 lncRNA downstream 591603 1223164 ~ 1234236 (-) True XLOC_028394
TCONS_00057981 lncRNA downstream 721063 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057980 lncRNA downstream 789793 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057307 lncRNA downstream 802139 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00057984 lncRNA upstream 9308 1848660 ~ 1855771 (-) True XLOC_028406
TCONS_00057308 lncRNA upstream 76434 1915786 ~ 1916566 (-) False XLOC_028408
TCONS_00057985 lncRNA upstream 76923 1916275 ~ 1978987 (-) False XLOC_028408
TCONS_00057986 lncRNA upstream 102681 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00057987 lncRNA upstream 134795 1974147 ~ 1975064 (-) True XLOC_028408
TCONS_00055151 mRNA downstream 1003 1821637 ~ 1824836 (-) True XLOC_028404
TCONS_00055150 mRNA downstream 7524 1809562 ~ 1818315 (-) True XLOC_028403
TCONS_00055149 mRNA downstream 24220 1801199 ~ 1801619 (-) True XLOC_028402
TCONS_00055148 mRNA downstream 24320 1788748 ~ 1801519 (-) False XLOC_028402
TCONS_00055146 mRNA downstream 40719 1766333 ~ 1785120 (-) False XLOC_028401
TCONS_00055155 mRNA upstream 39221 1878573 ~ 1908179 (-) False XLOC_028407
TCONS_00055156 mRNA upstream 40828 1880180 ~ 1914228 (-) True XLOC_028407
TCONS_00055157 mRNA upstream 81659 1921011 ~ 1930024 (-) True XLOC_028409
TCONS_00055158 mRNA upstream 149108 1988460 ~ 2036620 (-) False XLOC_028410
TCONS_00055159 mRNA upstream 150137 1989489 ~ 2014406 (-) True XLOC_028410
TCONS_00055131 other downstream 876997 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 1017386 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 1140420 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 221172 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 835754 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 2653214 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 2706857 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3091059 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

//