RNA id: TCONS_00055146


Basic Information

Item Value
RNA id TCONS_00055146
length 6764
RNA type mRNA
GC content 0.43
exon number 17
gene id XLOC_028401
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1766333 ~ 1785120 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTGACGGAGGCGTTAGAGGGGCAGCTTACGGTGGTTTATAACACCGTCGCCGccTCAGTGCAGGTTCAGGTGGAGCCGGTCGGCCGCTGGTTCGAGGCTTTTCTGAAGCGCAGGAACAGAAATGTGTCGGCTTCGTTTCAAGAgctggaggaagaggaggagctgtcagaggaagaggaggatgaagagcTTCAGCTGGAGGAGTATCCCATGCTGAAGACACTGGACCCCAAAGACTGGAAGAACCAAGATCACTATGCTGTTTTAGGTCTGGCACACGTCAGGTATAAAGCAACGCAGAAACAGATCAAAGCTGCTCACAAAGCGATGGTCCTTAAGCATCACCCAGACAAGCGGAAAGCAGCAGGAGAGCAGATTGTGGAAGGCGATAATGATTATTTCACATGCATAACTAAAGCAATAGAGATCCTGTCAGATCCAGTGAAGCGGAGAGCGTTTGACAGCGTCGATCCAACGTTTGACAATGCCGTTCCTACAAAAGCAGAAGGCAAAGAAAACTTCTTCGAGGTGTTTGCACCGGTGTTTGAGAGGAACGCCAGGTGGTCTGTTAAAAAGCACTTCCCCAGTCTGGGAACTATGGAGTCATCGTTTGAAGATGTGGATAATTTCTATTCATTTTGGTACAACTTTGACTCCTGGAGAGAATTTTCCTATTTAGACGAGGAGGAAAAGGAGAAGGCTGAATGTCGAGATGAGCGGCGCTGGATTGAGAAGCAGAACCGAGCATCTCGAGCACAGAGGAAGAAGGAGGAGATGAACCGGATACGGACCCTTGTTGacACGGCCTACAATGCTGACCCGCGGATAAAGAAGTTTAAAGAGGAGGAGAAAGCCAGGAAAGAGTCTGAGAAGAAGGCCAAAGTGGAGGCCAAGAAACGAGAGCAGGAGGAGAAAGAGCGGgcacgTCAGCAGCAGGAGGAGGCGGCGCGGCTGCTGAAGGAGCAGCAGGAGGAGGCGGCGCGGCAGGCAGCTCAACAGGCTAAGAAGGAGAAAGAGGCGCAGAAAAAAGCCATTAAGAAAGAGCGGCAGAAACTCCGCATGACCTGCAAGAGCCAAAACTACTTCACAGACAATGAGGCGGACAGCGTGAGGATGATGGAGGAGGTGGAGAAGCTCTGCGACCGCTTGGAGCTCATCAGttTGCAGACGCTCAATGAAGCTTTGTCTGCTGGCAATAAAGAGCAGAGTAAAGCAGCTCTGGAGAAACAGGTGCAGGAGGTGAACATGCAGCTGCAGAAGGAGAAGGATGCAGAGCTGCAGGCTCAGCAGGCAGCGCGTGGCTCTGAACACAGCAGTGCAGCAGGAGGACAAAACAACAGAGGCTGGAGCGAAGAAGACCTGCAGCTGCTCATCAAAGCCGTCAACCTGTTTCCTGCTGGAACAAACGCCAGGTGGGAGGTGATCGCTAACTACATGAACCAGCACTCCAGCAGCGGCGTCAGGAGAACCGCCAAAGACGTCATCAATAAAGCCAAAACACTGCAGAAACTGGatcCGCACCAGAAAGATGAGATTAACCGAAAGGCCTTTGAGAAGTTTAAGAAGGAGCATTCAGCCGTTCCTCCCACTGTAGACAACGCCATGCCGTCAGAGCGATTCGATGCTGTAGGTGCAGACTCGAACGCTGCCGCCTGGACCACAGAGGAGCAGAAGCTTCTGGAACAGGCTCTGAAAACCTACCCGGTGAGCACGGCCGAGCGCTGGGAGAGGATCTCTGAGGCGGTGCCCGGACGCTCCAAGAAAGACTGCATGAAGAGATATAAAGAGCTGGTGGAGATGATAAAGGCTAAGAAAGCGGCACAGGAACAGGTCGctgctaaaaacaaaaaatgacaaaacacacacacacacacaacctggtcttttaactttatttgtgttgttctttattttataataaaataaacatggaaAAAAGCAGATCTGGAGCTCTGTGGCCTGTGTTGAGTGTTTACCAGCACATGCCATTGCGGATGCTGTTATAATCCAGCAGCTGCTCGATGGGTCCTGCAGACGGTCAATAattggtgtgtttaattagggagaATATCAAACACTTCATTACTACCAGTGTTGGGTTAACAGATAAGTCATATATTACAATCTTAAGCCTatcttaatattttaaagaaggcaaacataacataacacacaCTTTCACATTACTATCCTTAAAAAAGTAACTGATATTACAACCATACACCAATCTCAATCTTTAAAAACTGGcagaaatattataaaatatactttcacattacttttatttaaaaagtaacacatttagtcactttttccatttaaaaatgGACTTAAGATTGTGATGTTATGACCTTTTTTTAACATTCTCGATTGTTTTTAAAGGAGAATGAACAGAACAAAGAGTTAAATTCAATTTATTTGTACACCAATAACAATGTAACACTAAAATAAGAGtccattagtttatttatttactaacatcaaCAAACAACGGATAATAGAGAATTTAATCATGCAGGTTAATATTTAAGTTGttgattgttagttcatgttaactcgttGTGCATTATCTAGCgctgttaataatgcattagtaaatgttaaactataattaatgcATGCTGTTCAAGATTGTTCAAGTTAGTAAATGCatgaactaatggaccattatttcaaagtgttaccCAAATTACTATATCATCCTTTTACATCTGAACTATTTACTCTGTCTGAGTAACaagaaaaaagtaatatattatatttaaaagtctGTTAACCCAACACTGAAGAGCACAGAGTGAAGACGTCCACTTACCCACAGCTGCAATAGCAGGAGCTTTATTATAGATGTATTTCAGACACACGTCCTTTATAGTCGTGGCGttaatggcctgaggaaagaaatgGGCAGATTTAAGCTGGATTTGGACACACACTGGCTCTCATTCACTTGTAATCAGTAACTAATACTAATTTTTAACTGAGAATAagtctatttttaatatttctaacGAAAACTTTCTGCTTAATTCACAAATCGTGCACATGTGCTTGAGTTAATATAGTGAACATGAATTGTTTTCAGAAAGCGTCCTTGTGCACTATATTACTCATTTGCATAATACACGcccacattacatttacatttagtcatttagcagacgcttttatccaaagcgacttacaaatgaggacaaggaagcaatttacacaactataagagcaacaatgaataagtgctgtaggcaagtttcaggtgtgtaaagtgtaagaagtaaaacattagtaattttttttgtagttagtggaggagttagagagggaattgcagattaggaagtggagactaaatagttgagtttttagtggtttcttgaagacagcgagtgactctgctgtactgatgcagttagggagttcattccaccaactgggcagattgaacgcgagagttcgggaaagtgatttcttccctctttgggatggaaccacgaggcgacgttcattcactgaacgcaagtttctggagggcacatacatctgcagaagtgagagcagataagaaggagcaaagccagaagtcgctttgtaagcaaacatcagagctttgaatctgatgcgagcagcaactggcagccagtgcaaacggatgagcagcggagtgacatgtgctcttttaggttcattaaagaccactcgtgctgctgcgttctgaagaggtttgatagagttagctggaagcccggctagtagagagttgcaatagtccagtctgcaCATTAGCTCCATATAAGGGCAGAAATCGACAGAGATAATTATAAGAAGTCAAATTATGAATTAGGAAGAGACAATTATGGCACCCAAACAAACAGTAATAGAGTTTATTTTTGATGTCGGCTGCTTTCAGTTCTGAAAAGGCGAGGTGAAACACTGCATTTTTGTTGACTTTAGATAAGAGCTTTTTTTTATAATCCAAAACACTTGATGCCAATAGAAAACCATTTAAAAGGCACCTCTTAGCTTAATCTCATTATATATAAGGTTTTTTTAATCGTGCATGGATGATTATTGTGTATTTGttgttatagatttttttttttttgtagatgttAGTATGATTGTTTTGATGAATCATGATTTATTTTTGAAACATCTGTCCGTACGTGCATTTTTGCATTTCGTGCATTTTCgtgcatttatttttctaaagAGAGAATCAAATGTTTACGCACGTCTATTCTGGCCTCGAGCTCGTGCAGAGGAATCCTGCGACTGTAGCACAGCATCTGACGCCCGATGTCCTCACAGATGGGTGTGGATCCTGCACACACATGCATCACAcagcgtcacacacacacatcatatgtGAGCACGCACACTTCACACATCTCTACACAGACagatgcacacagacacactgaTCTGGCACTGACCGTCCAGGTGAAGCAGCATGTTGGTCTTCAGCAGGTTCTTGGCTCTGTTCACTTCACTTTCAGTCACACTCGTGCACAGAGACTTCCTGAAAGCAAACGTGTGTTCATTACCGGAAATGATCGGCCCTCGTTTGTgtcaaattttttattattttacaaacaacgaagagttttttttcttcaacattTTCAAACCGTAGCTTCATTAAATCATTTCTAATGGCTGAttgcttttgtctttgccatgatgacagtaaataatatttgactagatatttaagaGCTTATAAAATATTCCTGAACTCGCAGAACTCTGAGGTTCACTTCTCACCATTCCAGCTGAGTGAATCGGATCATGTCGTGGACGGTTCCCGGCTCACACACCATGTAAAGCCCCCACAGGCCTGTGTCTGTGTAGCAGGTGTTGAAGGACTGGAAGCTGTGGCACAGGTTCCCCTGGCAGGACATCTGGGCCAGTTTACTGGACaagttctgcaaaaaaaaaaacttgctttggTTAGCTGAGCGAACACTGCGTTATGAAGCTTTGTGAATCAGTGATGGACGATACACGAATGAATCATTGTTTTTAACCAGATCTTCAGTGTTTGGTCAGTTCACCAAATCAAActgtttaaaccaggggtcaccaatctcggtcctggaggttcggtgtccctgcagggtttagctccaacttgcctcaacacacctgcctggatgtttcaggtatacctagtaagaccttgattagcttgttcaggtgtgtttgattagggttggagctaaaatctgcaggacaccggccctccaggaacaagtttggtgatccctggtttaAACAGTTTgcatctccagtaagcacttatccacaaattacttagggcctactcacactatgccatccgtaccatgcccagaCCCGTTTACCGGATCaggaagtgtgagtgcgctgaatcgggctcaagctcAGTTCAcctggccggccctggcccggttggaagaggtgggcctgagcgcggttcacttgggcccgaaactgaaagctaGACGTgattttaagggactgtttgatatgatttattaatcattcttactgttcagtaaacgcaaactgccgtagtttattaaagacgcaaacccctcactgcacgacagctgcaccttcagcagacctcctcattcctgcagcacgagagctttatgattatgagcgccaaaagtggcggatctgtttggtgaaatatctgactgcgtttcaccgcatctctaaggactgtttggcgaaatatctgactgcatgtcactgcatatcaaaccactgaaacgatataactacagaaatctccactgtgctgctgattgacagtgcttctcactgaacagtgcagcagcgatgacataagcgtgccgaggcccgattgtggagtgagtgcgggccgtcgggggagacgggaggggggacaagcgtgctttggcccggtttgaggcaactgtatcTAGTGTGAGTCTGGCCTTACTCTTTAACATGCCTGATACTAGGCATGAGACGACTATTatgttcaaaaatgtgttttctctctgttaaacaacacttgagaaatgtaaatgttttaataaaaatttcacagtaggttgaataattaaaaaacccTTAATGGCGTAATTTAGTTCTTCAGAATAATTTTCAGCACATTGAGTCTCTATTCAGCATTGAGTGAAGATCTCACCATTCCTCCGCCGAGCGAGCGGTCCCAGTTCCCGATCAGTGTGTTTGCCACCATCAGAGGAATGGTGTCTGGATGAGACCAGCCGACCGCCTCCACGGCCACTGCGATATGAGCCAGAGGCATCTTATCATCACGCACACGAATCTGGAGAAAACACGCGGTAAGacttttaaaaatcttaactTGCTTCAaagttttattgtataaaaaaaaaaaaagttgattagAAGTGCATTACTGTAACGCTTGATTTTGTCCATTAGTGCTGTTTAATGATCATGACTACatccttcaaaataaaagtttgtatttacatattgtGCATGTATTGTGTAAatttaatatgtatataaatgcagatgcatacatttatatatctttttattatatttttattaaaataaatataaattacaaataaacattgtacatgttttatttttataaataaaaaattgtgcgtgtgtgtatatatgtgtgtgtgtgtatatatatatatatatataaacaaaattctATACATGTAATCATGGATACAagataaatatacacagtacacaaaaTTATGTAaactgacttttattttgtatttgattaA

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0061649 ubiquitin modification-dependent histone binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-040426-1912 Predicted to enable chromatin binding activity and ubiquitin modification-dependent histone binding activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin organization. Predicted to be located in cytosol and nucleus. Is expressed in several structures, including immature eye; nervous system; neural plate; pectoral fin; and segmental plate. Orthologous to human DNAJC2 (DnaJ heat shock protein family (Hsp40) member C2).

Ensembl:

ensembl_id ENSDART00000103463

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057982 lncRNA downstream 506592 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00057983 lncRNA downstream 532097 1223164 ~ 1234236 (-) True XLOC_028394
TCONS_00057981 lncRNA downstream 661557 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057980 lncRNA downstream 730287 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057307 lncRNA downstream 742633 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055154 lncRNA upstream 46618 1831738 ~ 1839164 (-) True XLOC_028405
TCONS_00057984 lncRNA upstream 63540 1848660 ~ 1855771 (-) True XLOC_028406
TCONS_00057308 lncRNA upstream 130666 1915786 ~ 1916566 (-) False XLOC_028408
TCONS_00057985 lncRNA upstream 131155 1916275 ~ 1978987 (-) False XLOC_028408
TCONS_00057986 lncRNA upstream 156913 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00055145 mRNA downstream 8873 1732825 ~ 1757460 (-) True XLOC_028400
TCONS_00055144 mRNA downstream 45685 1689312 ~ 1720648 (-) True XLOC_028399
TCONS_00055143 mRNA downstream 81986 1648052 ~ 1684347 (-) True XLOC_028398
TCONS_00055142 mRNA downstream 81998 1647098 ~ 1684335 (-) False XLOC_028398
TCONS_00055141 mRNA downstream 268949 1469106 ~ 1497384 (-) True XLOC_028397
TCONS_00055148 mRNA upstream 3628 1788748 ~ 1801519 (-) False XLOC_028402
TCONS_00055149 mRNA upstream 16079 1801199 ~ 1801619 (-) True XLOC_028402
TCONS_00055150 mRNA upstream 24442 1809562 ~ 1818315 (-) True XLOC_028403
TCONS_00055151 mRNA upstream 36517 1821637 ~ 1824836 (-) True XLOC_028404
TCONS_00055152 mRNA upstream 40719 1825839 ~ 1839352 (-) False XLOC_028405
TCONS_00055131 other downstream 817491 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 957880 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 1080914 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 275404 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 889986 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 2707446 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 2761089 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3145291 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_03693075_03706692.mRNA True 1721 mRNA 0.49 11 CI01000066 3692806 ~ 3707019 (+)