RNA id: TCONS_00055149


Basic Information

Item Value
RNA id TCONS_00055149
length 421
RNA type mRNA
GC content 0.50
exon number 1
gene id XLOC_028402
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1788748 ~ 1801619 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATGAATATTAAGTAGCAAGCCGTCAACATACTATCCTTAGTAATTTCGCACCCGGCCCACCACGCACGTATATATACCGGGGGAAAACGGCAGATTTTGACCGGGCTATGGATAGCGGAATCGAGAGAAAGCgttaaagagtcgaattcgctgGATTAAACGCGAAGGAATGATTTAAATTGGATTTAAAACCCAACGCATACCCGTAGGCTCGGTCCAGCGCGGTGCTGGTCCACATCTGACCGTCGGTGGTGACTCACGGAGATAGGGCCGTTAACGGAGTATTGCTGACCGGTCCGATATATATCTACAGATTTCAGCATGAAGTTTAAACCGAACCAGACGCGGACGTACGACCGGGAGGGATTCAAGCGGCGAGCGGCGTGTCTGTGCTTCAAAAACGACCGGGAGGATGAGGT

Function

GO:

id name namespace
GO:0071543 diphosphoinositol polyphosphate metabolic process biological_process
GO:1901907 diadenosine pentaphosphate catabolic process biological_process
GO:1901909 diadenosine hexaphosphate catabolic process biological_process
GO:1901911 adenosine 5'-(hexahydrogen pentaphosphate) catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000298 endopolyphosphatase activity molecular_function
GO:0034431 bis(5'-adenosyl)-hexaphosphatase activity molecular_function
GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity molecular_function
GO:0050072 m7G(5')pppN diphosphatase activity molecular_function
GO:0008486 diphosphoinositol-polyphosphate diphosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-79 Predicted to enable pyrophosphatase activity. Predicted to be involved in diphosphoinositol polyphosphate metabolic process and nucleotide catabolic process. Predicted to be active in cytoplasm and nucleus. Orthologous to human NUDT4 (nudix hydrolase 4).

Ensembl:

ensembl_id ENSDART00000135749

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057982 lncRNA downstream 541458 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00057983 lncRNA downstream 566963 1223164 ~ 1234236 (-) True XLOC_028394
TCONS_00057981 lncRNA downstream 696423 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057980 lncRNA downstream 765153 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057307 lncRNA downstream 777499 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055154 lncRNA upstream 30119 1831738 ~ 1839164 (-) True XLOC_028405
TCONS_00057984 lncRNA upstream 47041 1848660 ~ 1855771 (-) True XLOC_028406
TCONS_00057308 lncRNA upstream 114167 1915786 ~ 1916566 (-) False XLOC_028408
TCONS_00057985 lncRNA upstream 114656 1916275 ~ 1978987 (-) False XLOC_028408
TCONS_00057986 lncRNA upstream 140414 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00055146 mRNA downstream 16079 1766333 ~ 1785120 (-) False XLOC_028401
TCONS_00055147 mRNA downstream 24847 1771066 ~ 1776352 (-) True XLOC_028401
TCONS_00055145 mRNA downstream 43739 1732825 ~ 1757460 (-) True XLOC_028400
TCONS_00055144 mRNA downstream 80551 1689312 ~ 1720648 (-) True XLOC_028399
TCONS_00055143 mRNA downstream 116852 1648052 ~ 1684347 (-) True XLOC_028398
TCONS_00055150 mRNA upstream 7943 1809562 ~ 1818315 (-) True XLOC_028403
TCONS_00055151 mRNA upstream 20018 1821637 ~ 1824836 (-) True XLOC_028404
TCONS_00055152 mRNA upstream 24220 1825839 ~ 1839352 (-) False XLOC_028405
TCONS_00055153 mRNA upstream 25393 1827012 ~ 1839192 (-) False XLOC_028405
TCONS_00055155 mRNA upstream 76954 1878573 ~ 1908179 (-) False XLOC_028407
TCONS_00055131 other downstream 852357 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 992746 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 1115780 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 258905 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 873487 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 2690947 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 2744590 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3128792 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

//