XLOC_028413 (si:ch73-278m9.1)


Basic Information

Item Value
gene id XLOC_028413
gene name si:ch73-278m9.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2210317 ~ 2219705 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055171
AAGAAGATTTTTGTCAACATTGGGGGAATGTTCGTGGGACGTGTGGGTGGTCAgcattagtttagtttttgtgtgtttttccgGTCGAGATGGTTTTGTCCTCCTCGCAGCAGCTCGTCATGGCGTTCACCGCGGTGCTGCTGGTGTTCGTGCTGTTCCCGAGGCTGTTCGGCGGCGGCAGCAGAGACAATCAACCGTACGAGCCGCGGAGCAACCGGAGAGCAGCAGGTCCCGGTCCGGGTATCGGTGCAGGAGCTGTGAGGAATCAGCAGCAGCTCCAGAAGGGCGCAGCACCTCAGATGAGCCACAGTGTGGAAAACATGCAGCAGATGAAGAAACTGATGGAGCAGGAGCTCAAGAGCGACAAATACAAATCCAACAACAACAAGGGCTACGTCTTCACACTCATGCCCATCTACGCCATCGGGGTCGGCCTCTTTGCTGCTTACAAGTTTCTCAAGATAAAGTCTGCAAGCGACTCTGAAGCTCAAAAAGCCAAAACAGCTCGAGGAGTGAAGAAATCCGAGGAAACAgAGAATCAGCTGAATGAGTTGGAGCAAAGGTTGGCTCAGACGGAGAAGATGCTCAACTCTATACTGACACAACTGGACCCGCTTACAAACTGTGTGAAATCTGTTGCCATGGAGCAGAAGAACGAGATCATGTCGCAGCTGCAGTGCATTCGCCAGCTAATGAAGAAGAGGGGCATGGAGTGTCCAAACATCAGGATAGAAGAGCCGAGCTGTGAACGCAATCTAGACCAGCTCATCCAGAATCTATCTGCAGCAGAAACGCAGCCAGAAACCAGCCAGGAAACACAGACCAGTGCAGAAACACAGAAGACAGAAGAGGAAGTGGAAGAGGACGTAGAAGAGGAAGTGGACACACAGCAGGAAGAGGAAATGGACAGTGATTCTAGTCTGCCTTCCCTTGAGGACAGTGTAGACGATGTCTCTGACACTCAGAAACTTCCAGAAGAGCTGGCTGAAGGATTACGGAGACGCCACAGACC

Function

symbol description
si:ch73-278m9.1 Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Orthologous to human CCDC107 (coiled-coil domain containing 107).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-261 Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Orthologous to human CCDC107 (coiled-coil domain containing 107).

Ensembl:

ensembl_id ENSDARG00000079143

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055171 True 1012 mRNA 0.52 6 2210317 2219705

Neighbor

gene id symbol gene type direction distance location
XLOC_028412 kcnc2 coding downstream 13389 2060524 ~ 2196928 (-)
XLOC_028411 cpsf6 coding downstream 151015 2041067 ~ 2059302 (-)
XLOC_028410 FAR2 coding downstream 173697 1988460 ~ 2036620 (-)
XLOC_028408 NA coding downstream 231260 1915786 ~ 1979057 (-)
XLOC_028409 si:ch73-177h5.2 coding downstream 280293 1921011 ~ 1930024 (-)
XLOC_028414 krr1 coding upstream 39230 2258935 ~ 2265271 (-)
XLOC_028415 phlda1 coding upstream 129630 2349335 ~ 2350371 (-)
XLOC_028416 nap1l1 coding upstream 135187 2354892 ~ 2380173 (-)
XLOC_028417 NA coding upstream 172367 2392072 ~ 2440175 (-)
XLOC_028418 NA coding upstream 226052 2445757 ~ 2479720 (-)
XLOC_028406 NA non-coding downstream 354546 1848660 ~ 1855771 (-)
XLOC_028393 NA non-coding downstream 950576 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding downstream 976081 1223164 ~ 1234236 (-)
XLOC_028392 NA non-coding downstream 1174271 1028836 ~ 1036046 (-)
XLOC_028422 NA non-coding upstream 444463 2664168 ~ 2666870 (-)
XLOC_028427 NA non-coding upstream 1031069 3250774 ~ 3257564 (-)
XLOC_028428 NA non-coding upstream 1086440 3306145 ~ 3308415 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_02256946_02264417 CCDC107 coding CI01000066 null 2256594 ~ 2265481 (-)