XLOC_028416 (nap1l1)


Basic Information

Item Value
gene id XLOC_028416
gene name nap1l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2354892 ~ 2380173 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055174
TTTTAGCGCCATCAGAGCGGGAGTCTCGCTGTTTCACCGCCGCCTCATAGACATCCACACATCGGGCTCTCGGAAACAACACAAACGGTGAAACAACATGGCAGATCTTGACAATAAAGACCAGGCTGAAATGGACCCAGCAGATATGGAAGATgttgaagaggaggaggaagacgCTGGGGAAGACAACAGTAAAGCACGTCAGCTGACGCGGCAGATGATGCAGAATCCTCAGATTCTGGCGGCGCTGCAGGAGAGGCTGGATGGACTCGTAGGATCTCCCTCAGGATACATGGAGAGTTTACCAAAGGTGGTGAAAAGACGTGTTAATGCACTTAAGAACCTCCAGGTCAAATGTGCCCATATCGAAGCTAAATTCTATGAAGAAGTCCACGAGCTGGAGCGAAAATATGCAGCTCTTTATCAGCCTCTGTTCGACAAGCGGAGTGAGATCGTGAGAGCGGCGTATGAACCCACAGATGAAGAGTGTGAGTGGAAGCAGGATGAGGAGGAAGAGCTGACAGTAAGTAAGCAGGAGGAAATGAAGGAAAAGGCCAAAGTGGAGGAGGAGAAAAAAGACGAGGAGAAGGAAGATCCCAAAGGCATCCCAGAGTTCTGGCTCACAGTTTTCAAGAACGTGGACCTTCTCAGTGAAATGTTGCAGGAACACGATGAACCCATCCTGAAGCACTTACAAGACATTAAAGTCAAATTCTCTGACGCCGGACAGCCCATGAGTTTCACATTAGAGTTCCACTTTGAGCCCAATGATTTCTTCACACAAACAATCCTGACAAAAACCTACAAGATGCGGTCTGAGCCGGACGAGTCGGACCCCTTCTCTTTCGACGGGCCGGAGATCATGGGCTGCACGGGCTGCACGATCGACTGGACTAAAGGCAAGAACGTCACATTGAAAACCATCAAGAAGAAACAGAAGCACAAGGGTCGTGGCACAGTGAGGACGGTCACCAAGACGGTTCCCAACGATTCATTCTTCAACTTCTTCTCTCCGCCTGAAGttcCAGAAAGCGGTGAGCTGGATGAAGACTCAGAGGCAGTTTTAGCAGCAGATTTCGAGATCGGTCACTTCATCCGTGAGCGTATCGTTCCCAGAGCTGTGCTGTATTTCACTGGAGAGGCCATCGAAGATGACGATGATGACtatGATGAGGAGGGAGAGGAAGCGGATGATGAGgAGGGCGAAGAAGAGGCAGATGAGGAGAACGATCCAGACTATGAGCCCAAGAAGGACGCCAATCCCCCAGAGGAGTGCAAACAACAGTGATGGCGGCGCCGGCTCCTTCAGGATCCCCCTACACTGTAACGGCTTCAACAACAACACATAGTTACTTACCGCCTtacaatgttttgtatttttcttggtagaaataattg

Function

symbol description
nap1l1 Predicted to enable chromatin binding activity and histone binding activity. Acts upstream of or within response to yeast. Predicted to be active in chromatin and nucleus. Is expressed in several structures, including immature eye; nervous system; neural tube; pharyngeal arch; and pronephros. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to several human genes including NAP1L1 (nucleosome assembly protein 1 like 1).

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0030154 cell differentiation biological_process
GO:0001878 response to yeast biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030516-2 Predicted to enable chromatin binding activity and histone binding activity. Acts upstream of or within response to yeast. Predicted to be active in chromatin and nucleus. Is expressed in several structures, including immature eye; nervous system; neural tube; pharyngeal arch; and pronephros. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to several human genes including NAP1L1 (nucleosome assembly protein 1 like 1).

Ensembl:

ensembl_id ENSDARG00000101813

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055174 True 1398 mRNA 0.50 15 2354892 2380173

Neighbor

gene id symbol gene type direction distance location
XLOC_028415 phlda1 coding downstream 4521 2349335 ~ 2350371 (-)
XLOC_028414 krr1 coding downstream 89621 2258935 ~ 2265271 (-)
XLOC_028413 si:ch73-278m9.1 coding downstream 135187 2210317 ~ 2219705 (-)
XLOC_028412 kcnc2 coding downstream 157964 2060524 ~ 2196928 (-)
XLOC_028411 cpsf6 coding downstream 295590 2041067 ~ 2059302 (-)
XLOC_028417 NA coding upstream 11899 2392072 ~ 2440175 (-)
XLOC_028418 NA coding upstream 65584 2445757 ~ 2479720 (-)
XLOC_028419 csrp2 coding upstream 131456 2511629 ~ 2525934 (-)
XLOC_028420 e2f7 coding upstream 150668 2530841 ~ 2545345 (-)
XLOC_028421 cog5 coding upstream 168610 2548783 ~ 2637710 (-)
XLOC_028408 NA non-coding downstream 375835 1915786 ~ 1979057 (-)
XLOC_028406 NA non-coding downstream 499121 1848660 ~ 1855771 (-)
XLOC_028393 NA non-coding downstream 1095151 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding downstream 1120656 1223164 ~ 1234236 (-)
XLOC_028392 NA non-coding downstream 1318846 1028836 ~ 1036046 (-)
XLOC_028422 NA non-coding upstream 283995 2664168 ~ 2666870 (-)
XLOC_028427 NA non-coding upstream 870601 3250774 ~ 3257564 (-)
XLOC_028428 NA non-coding upstream 925972 3306145 ~ 3308415 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_02395532_02401122 NAP1L1 coding CI01000066 null 2395296 ~ 2401122 (-)