XLOC_028417


Basic Information

Item Value
gene id XLOC_028417
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2392072 ~ 2440175 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057309
ataataaactgtgcaaacacacacacacgcatgcacacacacagactgcacACATATAaataccacacaaacacacacataaacaaataccacacacacacacacacatacaattaacagtgcaaacaaacattaaacagtgcaaacacacacacagactgcacACATGTAAATaccacgcaaacacacacaaaaacaccacacacaaacataaacaccactcacaacacacacacacacagactgcacACATGTAAataccaaacaaacacacacacataaacaccaaacacacaaaaacaaaaaccacacacatacaattaacaaacaaacataaaaaaaagtgcaaacacacacacacacacacacacataaatacctCACACACGtaaaaaccacacaaacacacgcataaacgcaacacacacataaacaccacacacaaataaacaaattctaCGCGCACACAGACAAAATTTCTGCACACACCTtaaactacacaaacacacatataaacaaataCCACAGATACAGAGACATAAATACTGCGCGGACATatacaccacacaaacacacacacacttacacacttgcaaaaacaaataccaccctaacacacacacacataaacactgccCACATTATAacagatcacacacacaaacacacacacaaacgtacaAAACACTAACTGAGATCTTTCCCTCAGGGCACAAAAGCAAACACAGCAGCCGCCACAGGAAGAAAGGAACCGATCTGAGCGAAATCCAAAGTGCCATTGAGTCCATCCGGCAAACCCAGGAGGACATTAACAGGAGCGTCAGTGCGCTGAGGAGTCGCATGGCCAGTCAGACGTCGACGGAAAGTTCGTTTCTGACGCACCGAGACATCGCCATCATCCTCTTCCTCATCTTCCTCCAGGTCCTGCTCAACTTCATCTTCAAGTAACGCCACAAGCATTCAGTATCAGCTCACGACACACTGACGTTTCATTCGCCACGTTTTTATCAATTCGTGTTGTGAGCGCTGGGAAAAGGATGGCAATACGGTTGAAGTGCATTGTGGGATGTTTTTCGAAATGACTGTTTACTTTTTGTCCTTCAAAAAGAGGAGTTATCATCAGCCtccaaatgttgttttaatttattggagtaatatttttaacaatgtttttacaTCGGCGCCCCCTGCTGTGGCGGAGGATGCTAGTCGATATACAAACGGGAAATCTCTAGGTCATATTTTGATTGAAGATATGCATTTTATTGCCTGTTTTTTTAGAGTTATGATATTATTTTCATGACCAATAAGCACATTTCAACCCCGATTCTCATTGTgtggactgcaaaaaaagaagaaactcTTGTTACTATAATCTACAACGTATGCTGTATTATTAGTATTTGTGATAGTATTCATATTACTGCCTTTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTgtcttaatgcatttttttttgtttataggatgtaaaaatgtgaaaaatgtaaaagaataaTTAGCAAGAATTGCCCAAATTTTAAACTTTAAGAGCGCCCCCTGCTGTAGTGGAGGAAACCACGTAGTCAATTCACAAACTACGCTAGTATCAcaaaaatattgcattattttaacTCAAATTGTAAATGCAAAGAGTGCCCCCTGTTGTAATGGAGGACAGCAGTCAGTCTAACAGACTAAAAAAAATGTAGGTCATATTTTACCCTAAAATCATGAGAAAATACAGTAATATGCAAAAAATCTTAATCTTATAATATGttgtgttatattattatattaatatacatataaGCACATTTCAAGCGATATTCTCATTCCTGAAGTGCAGAAAAActcatttatttaaactttaatccCAACAAAATGAGGCAAAAGTGAAATTAGGACCTCGAATTTCATTCGTATACTGAGTTGTAATAAAATCTGAGATGTTCAATAATAATGCTTAATATTTCCTTTAAAataaggcaaagataaaattagctgcacttttattttgtatactgATATAAAATTAAATCTGAGATGCACAATGATAAGAAGAATTTGGAAAGGATAAATATTTCCTTCAAAATAGAGTGAAATTAGTGCCTCCTTAAATTTGTGTATAGATATATAATACATCTGAGGTGcacaataataagaagaagaatttgGAAATGATATATACTTCTTTCATAAAACAGTGAAAATAGTGCCGCCATTAATTCGTATACtgatatataattaaatatgagATGCTCAACATTAATGAGAATttgaaaattacaaatatttctaaaaatattaaattagtgTGACCTTTAATTTGTGCATGGATATTAAAGAAAATCTGAGATGCAATATAATAACACGAATTtggaaattataaatgttttcttcAGTATTAGATGAACTTAGTGCCGCCTCATTCGTATAAGGATATAAAATTAAATCTGAGATGCACAGTAATGATACGAATTTGGAAATGAtgaatatttctttaaataataaggggtgaaatttaaataaaatattgtacatGGATATATAATATGTCTGAGAtgcacaataattataataagaaTTTTAAAATTTCCTTCGAAATAAGATGAAAGTGAAATTAGTGCCTCGTATTTAATTCATATACtgatatataataaatatgagtTGCACAATAATAACAAGATATTGGAAATTATTTGAAATTAGTGTCACTTTTAGATATACAATTAAATCTGAGATGCAAAATAATTAACAGTGTTTGGAAATGCTGAATATTTCCTTCAAAATAAGGTGAAAGTGAAAATAATGCCGCCATTAATTCGTATATTGACATATAATTAAATATGAGATGCTCAACAATAACGAGAATTTGGAAATTACAAATATTTCTTTCATAATAAGGGGTGAAAGTGGAATTAGTGTCACCTTTAATTTGTGTACGAATATAAATAAATCTGACATGCACAACAGTGATGAGAATTTGgaaatgctaaatatttttgatGAATAGTAACGGGAGATTGgaaatgctaaatatttaaacaaatgtttttgacTTATAAAAATATGAcctagacatttttttttgttcaaacgAAAAACATTTAAAGGAAAAAATCGAAGGTTCAATTTTCTTGCTGTTACTGGATATTTGACAGCAGATTTATGAAGGATTATTTTGCCACACGAGGTCAaactttgtattatttaaaaaacaaagcaaacaacgGGAACAATTTCACTTGAAATCTTAACTTTAAACAGCACAGTATGTGGATCCTGCATTTCATACGCTCGCGGCTTGCATTTTGAAGGAAAGAGAAatcttaatttattatattagtatGTACAGTAAAGCGAGCGAGCGTCCGGTTTaatatttactctctctctcttgagGAAAAGCGTAGATGTAGTGAAACTGTAGCAGGAAATTAACACTGTCGTCTCGTCCGCCACTGTTGCGAATTAAAAAGCCAAATAGTCTGCGAGTAGATTAGCGTGATTAGCGTCAACCTCTGTACATATGAAGAACcggtgtgtgttttttgtttttgtaccaGAGAAGAGCGTCACCCATCTGCCCACGTGTCTGAATGTGtgctaaaaaataataacttaattaaaatacaaaaaaccaCGTGCCTTTACCAGCGGGAATGCGGAGTTTTGTCTGGAGTGAATGTGCCATACTGAATATCTGCTCTCACTGTGAGTCCTACATTCTTTTCGTCCTGGAGCTCAAAGCTGCCAttattctcttttcttttcttttcttttcttttttattattattatgattattattattattattgataattttttatttaatttaattttttatttttttatttactttttgttttatttattgattttatattttgtgtttgttttattgttattttattatttttttatttaattaatttgttttgttttattatttttttatttaatacattttttattatttttattttatttatttattttttgttttattctattttcagttattttattttgtgtttgtttaatttttattttatttatttatttttgttttattttacttaaatttctttgttatttaattaattaatttattttttgtttgatttaattcatttttctttattttatttttattgaatttttatttattttattttttgtctgttttattttttattgtattcattttttatttattttattttattttatttttatttttttttttttattttattttttttttatcaagccAGGGATCAAACTCTCCGTCTCCTGCTGTCTGTTCAGTGTTTGTCACGTTTCACATTTCACGCTTTCCAGTTCGgctgttcttgttttgttttgtttggccCATGTTCATTTTGAagggtttttattttgttttagatttattttctGTCCTGCAGCCGTCTCTGTATGTACAGACGATGCTTTGTTTGTATTAACACAAATAACCTCCTGTAAGTTTACTGTCATCTGTGACATGTcaccaaataaatgaaaaacactgaTCATTTTAGTTAGTTTGGGTCattattgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttatatagtgcatttattatgTTTGGCCATACACCcgaagcgctttacaatcatgaggggggtctctccacaccaccaccagtgtgcagcataccCTTGGATgttgtgacggcagccacaggacaacggcgcc
>TCONS_00055175
ATGCCCAGTGACGATGCGGCTTTTCTGACCCCGGCCAAAATGAGTCAGAAAGGGAAGGAGGCGGGGCTACACACGCCCAATAAAGACCAGCTTACAAGCCCCTCCCTCAGCCCGGGCATCAGCTATTCCCACGGTTTTGACCGTGGCAAAGAGGAAATCCTGCCTCTGAAAGAAGACTCCACACACTCCATATCCAAGAGCAAgTCAGAAACCAAGCTCTATAATGGCTCAGATAAAGACGTGTCTGTGTCTGGAAACAAACTTACCAAGAAGGAGTCACTGAAGGTGCAGAAGAAGAACTACAGGGAGGAGAAGAAACGGGCCACTAAAGAGCTGCTCAGCACCATCACTGACCCCTCCGTCATTGTTATGGCCGACTGGCTCAAGATCCGTGGCACGCTGAAGAGCTGGACAAAGCTGTGGTGCGTGCTGAAGCCTGGCGTCCTGCTCATCTACAAGACCAATAAGAACGGACAGTGGGTTGGGACGGTCCTGCTGAACGCCTGTGAGCTCATCGAGAGGCCGTCCAAGAAGGATGGCTTCTGCTTTAAGCTTTTTCATCCACTGGAACAgtgtgtgtggtgtgcaggTCGGTGTTGGATGGACGCACTTGAGCTGGCTCTGAAATGCTCCAGTTTGCTGAAGAGGACGATGATCAGAGAAGGGAAAGAGGATCCGCCGCAGACAGCAGAGCATTCACACATCAACTTCTACAGTCTGCTGCGCGCGCACAACATGTTCAATGACAGCGACCAGTTTAAGGATCCTGACCTGTACTCGGACAAGTCGGACCGGGAGAACGAGCCGGAGCAGGAGGACGAAGAGAGCGACAGCGACACGTCAGAGCGACAGGAAGACTCGTACATCGACCTGGATCCCAACGAGACGCTGCGAGAAACCATGTACATCGAGCAGAGCCACGAGGAGCTCGGAGAGgcCGGTGAAGCATCTCAAACAGAGACGGTTTCAGAAGAGAATAAATCTCTGATCTGGACTCTGCTGAAGCAGGTTCGACCTGGGATGGACCTGTCGAAAGTGGTGCTGCCAACTTTCATCCTGGAGCCTCGATCATTCCTGGACAAACTCTCCGATTATTACTATCACGCAGACTTCCTGTCTGAAGCGGCGGTGGAGGAAAACGCCTATAACCGAATGAAGAAAGTGGTCAAATGGTACATTTCTGGATTCTACAAGAAGCCAAAGGGTTTGAAGAAGCCGTACAACCCCATTATTGGAGAAATGTATCGCTGTTTATGGATCCACAGCAGGACCAACAGCAAAACCTTCTACATCGCAGAGCAGGTATCCCATCATCCTCCAGTTTCAGCATTTTACGTCAGTAACAGGAAGGATGGCTTTTGTCTCAGCGGCAGCATCTTGGCCAAGTCAAAGTTTTATGGAAACTCTCTGTCGGCCATCTTGGATGGTGAAGCGAGACTGACGTTTCTAAACCGAGGGGAAGACTATGTGATGAACATGCCGTACGCTCACTGCAAAGTAGGATATTCTTTAACGcagatgttgtgtttgtgtgatcCGTCAAGGTTCAATGACAGCGACCAGTTTAAGGATCCTGACCTACAAAATTTCTGCACACACCTtaaactacacaaacacacatataaacaaataCCACAGATACAGAGACATAAATACTGCGCGGACATatacaccacacaaacacacacacacttacacacttgcaaaaacaaataccaccctaacacacacacacataaacactgccCACATTATAacagatcacacacacaaacacacacacaaacgtacaAAACACTAACTGAGATCTTTCCCTCAGGGCACAAAAGCAAACACAGCAGCCGCCACAGGAAGAAAGGAACCGATCTGAGCGAAATCCAAAGTGCCATTGAGTCCATCCGGCAAACCCAGGAGGACATTAACAGGAGCGTCAGTGCGCTGAGGAGTCGCATGGCCAGTCAGACTTCGTTTCTGACGCACCGAGACATCGCCATCATCCTCTTCCTCATCTTCCTCCAGGTCCTGCTCAACTTCATCTTCAAGTAA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0051983 regulation of chromosome segregation biological_process
GO:0006335 DNA replication-dependent nucleosome assembly biological_process
GO:0034723 DNA replication-dependent nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006996 organelle organization biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0051641 cellular localization biological_process
GO:0016043 cellular component organization biological_process
GO:0000280 nuclear division biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-110309-1 Orthologous to human OSBPL8 (oxysterol binding protein like 8).

Ensembl:

ensembl_id ENSDARG00000039724

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057309 False 4900 lncRNA 0.32 2 2392072 2397407
TCONS_00055175 True 2046 mRNA 0.50 17 2396024 2440175

Neighbor

gene id symbol gene type direction distance location
XLOC_028416 nap1l1 coding downstream 11899 2354892 ~ 2380173 (-)
XLOC_028415 phlda1 coding downstream 41701 2349335 ~ 2350371 (-)
XLOC_028414 krr1 coding downstream 126801 2258935 ~ 2265271 (-)
XLOC_028413 si:ch73-278m9.1 coding downstream 172367 2210317 ~ 2219705 (-)
XLOC_028412 kcnc2 coding downstream 195144 2060524 ~ 2196928 (-)
XLOC_028418 NA coding upstream 5582 2445757 ~ 2479720 (-)
XLOC_028419 csrp2 coding upstream 71454 2511629 ~ 2525934 (-)
XLOC_028420 e2f7 coding upstream 90666 2530841 ~ 2545345 (-)
XLOC_028421 cog5 coding upstream 108608 2548783 ~ 2637710 (-)
XLOC_028422 NA coding upstream 223993 2664168 ~ 2666870 (-)
XLOC_028408 NA non-coding downstream 413015 1915786 ~ 1979057 (-)
XLOC_028406 NA non-coding downstream 536301 1848660 ~ 1855771 (-)
XLOC_028393 NA non-coding downstream 1132331 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding downstream 1157836 1223164 ~ 1234236 (-)
XLOC_028392 NA non-coding downstream 1356026 1028836 ~ 1036046 (-)
XLOC_028427 NA non-coding upstream 810599 3250774 ~ 3257564 (-)
XLOC_028428 NA non-coding upstream 865970 3306145 ~ 3308415 (-)
XLOC_028430 NA non-coding upstream 952046 3392221 ~ 3405250 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_02438884_02448563 NA coding CI01000066 null 2438834 ~ 2448839 (-)