XLOC_028418


Basic Information

Item Value
gene id XLOC_028418
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2445757 ~ 2479720 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057988
CCTGCAGCCTTAGTAGAACGTCGATCCTTCGAGCGCAAGCAGACAGAACTCAACGATCGCAGATAAACAGTCGCGCAAGGAAGGAAGACGGACGTGCGGGCGAAGGCGCGCCGTTGTATCGCAATTCAGCGCTGTTCTTTCGCATCAAAACGCGTTTATGCCTGCCAATTCAAGCCTTGTAGATCCTTCCTGCCTATGTGGGACCGTTCCCGACAATTTGCGTTAAAATTCGCCCGAGAAGTTTTAACCCATTTACTGATGGACTGACAGACGGATTCTCATCGGACGACGCAATCTAACGTACAGAATTCAACACTCACCTCTTTATTTTCCTTAAGAGACACCCTGTGTTACCCCCCAGGAGGGCTTTAGAGCGGACAATTAAGACATGCAGACGTGTGAAGAGCGCTGACTGTGGCTCTCTGCAGAAACATGGAGCCTTGTGCCGAGTCTCAGGCTGATCCGGACAGAGCTCAGCCGTCAGACTTCATTAGTATTTCGCAGCCCTGTACAAGTAGATGGAAAGTGGTTTGCTGACTTCACCGCAACGCTGCCTCTCAAACTCAACGCAATTTCAGGGAGATTTGCAGCTGAGAAATAGTCGGTCACAGCATCTGAAATGGAGCGGTGCTGTATTAAAGCCGACCGGAGCAGCACAGAGGTAATAAGATCCTCCCCTGGAGCAAAACAGCTCACAGTACAGCCAGAGAGAGATCTGTCTGAAAGCTGCCCTCCATGCTTTACACCCCGCTCATCTTTCATTTTCAATTTTCCCTTTCTCTTTTGTGCATGTTGGTCACTTAAACAATTATTTTCGTGTGTACAAGGTTCCCAAACTTCtgaaagtgttttaaatttaataagtaCTAAAACAAATATAggtccttgctgtgaggcgatcatgccacccactgcgccaccttgatgctgaattattagacatttaatttaatttcatacacattttttaccttatttaca
>TCONS_00057989
CCTGCAGCCTTAGTAGAACGTCGATCCTTCGAGCGCAAGCAGACAGAACTCAACGATCGCAGATAAACAGTCGCGCAAGGAAGGAAGACGGACGTGCGGGCGAAGGCGCGCCGTTGTATCGCAATTCAGCGCTGTTCTTTCGCATCAAAACGCGTTTATGCCTGCCAATTCAAGCCTTGTAGATCCTTCCTGCCTATGTGGGACCGTTCCCGACAATTTGCGTTAAAATTCGCCCGAGAAGTTTTAACCCATTTACTGATGGACTGACAGACGGATTCTCATCGGACGACGCAATCTAACGTACAGAATTCAACACTCACCTCTTTATTTTCCTTAAGAGACACCCTGTGTTACCCCCCAGGAGGGCTTTAGAGCGGACAATTAAGACATGCAGACGTGTGAAGAGCGCTGACTGTGGCTCTCTGCAGAAACATGGAGCCTTGTGCCGAGTCTCAGGCTGATCCGGACAGAGCTCAGTCTCACAGGCCGAGAGATAACACAGCAACAGATAACTAGATCTGTATGTTTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057988 False 981 lncRNA 0.47 3 2445757 2479720
TCONS_00057989 True 530 lncRNA 0.51 3 2447839 2479720

Neighbor

gene id symbol gene type direction distance location
XLOC_028417 NA coding downstream 5582 2392072 ~ 2440175 (-)
XLOC_028416 nap1l1 coding downstream 65584 2354892 ~ 2380173 (-)
XLOC_028415 phlda1 coding downstream 95386 2349335 ~ 2350371 (-)
XLOC_028414 krr1 coding downstream 180486 2258935 ~ 2265271 (-)
XLOC_028413 si:ch73-278m9.1 coding downstream 226052 2210317 ~ 2219705 (-)
XLOC_028419 csrp2 coding upstream 31909 2511629 ~ 2525934 (-)
XLOC_028420 e2f7 coding upstream 51121 2530841 ~ 2545345 (-)
XLOC_028421 cog5 coding upstream 69063 2548783 ~ 2637710 (-)
XLOC_028422 NA coding upstream 184448 2664168 ~ 2666870 (-)
XLOC_028423 slco1c1 coding upstream 195178 2674898 ~ 2727573 (-)
XLOC_028408 NA non-coding downstream 466700 1915786 ~ 1979057 (-)
XLOC_028406 NA non-coding downstream 589986 1848660 ~ 1855771 (-)
XLOC_028393 NA non-coding downstream 1186016 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding downstream 1211521 1223164 ~ 1234236 (-)
XLOC_028427 NA non-coding upstream 771054 3250774 ~ 3257564 (-)
XLOC_028428 NA non-coding upstream 826425 3306145 ~ 3308415 (-)
XLOC_028430 NA non-coding upstream 912501 3392221 ~ 3405250 (-)
XLOC_028431 NA non-coding upstream 927991 3407711 ~ 3415152 (-)

Expression


Co-expression Network