XLOC_028427



Basic Information


Item Value
gene id XLOC_028427
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 3250774 ~ 3257564 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00057990
attacatttaattcacGTCTACCCCACCCCAGCCCTAACCCCAATCCTCATCATAGTAACTCAAAAAACTGTtattatacataatattattcatattattaattaaatgactCATAAAAATGCGTTTTAGCAATGCCTACCTTACCCCAACTCTCACAGTAtcataaaataacaattattgttgtacaatatcgaaaaaaacaaaacaaaagtactgCTGTATTGAAACGTGATGCTCGACGACGCCATTTTGGAATTTCGATTCAACGGATGACATTCCGATAGTATTCGTTGACAACTTAAAAAGCAGTTAAAAGGAGAAACTATTGGAGTCTGTCCACCCTGGAGACACCAGAGGGCAGTACAACATCAAGAGCCCAGTGGTTTATGGAGAGAAAATGGAGAAGTGACACTCAGAATATCCCACCGGAGGAAGTGACATCACATATCAACATATTGAGCACGATGACAGGAGTGAGGATCCAAAGGCAGCTTTATTGGCAAAGGGGAGGATTGAGACAGGCAGGGTCAACACAGGAACAAACAACAATATCCAAG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00057990 True 558 lncRNA 0.39 3 3250774 3257564

Neighbor


gene id symbol gene type direction distance location
XLOC_028426 plekha5 coding downstream 105415 2948063 ~ 3145359 (-)
XLOC_028425 aebp2 coding downstream 305468 2923199 ~ 2945306 (-)
XLOC_028424 pde3a coding downstream 382662 2752852 ~ 2868112 (-)
XLOC_028423 slco1c1 coding downstream 523201 2674898 ~ 2727573 (-)
XLOC_028422 NA coding downstream 583904 2664168 ~ 2666870 (-)
XLOC_028428 NA coding upstream 48581 3306145 ~ 3308415 (-)
XLOC_028429 pik3cg coding upstream 85607 3343171 ~ 3353595 (-)
XLOC_028430 NA coding upstream 134657 3392221 ~ 3405250 (-)
XLOC_028431 NA coding upstream 150147 3407711 ~ 3415152 (-)
XLOC_028432 CU928073.1 coding upstream 188447 3446011 ~ 3456102 (-)
XLOC_028418 NA non-coding downstream 771054 2445757 ~ 2479720 (-)
XLOC_028417 NA non-coding downstream 810599 2392072 ~ 2440175 (-)
XLOC_028408 NA non-coding downstream 1271717 1915786 ~ 1979057 (-)
XLOC_028406 NA non-coding downstream 1395003 1848660 ~ 1855771 (-)
XLOC_028435 NA non-coding upstream 556054 3813618 ~ 3819984 (-)

Expression



Co-expression Network