LOC110536393


Basic Information

Item Value
gene id LOC110536393
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 75866632 ~ 75878332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110536393
ATTTTTATCAGCACACTGTTATGACGATGTGGCATTCAACAAGTTCTGCAGTTGCGGTTGTTGTGAAAGTAACAAAGGTCTTTCCGATAATGGATATTTCGCTCCGGGCAAagcagCTGGATCTACTACTACTACGCCATCCTGTTTCGTATGTTGATGCCATGCGAGACGGGCGTCTCAGACCATTGTGTACTGCGCCGTGTCGGACGAGGCCACCAAGCACAATGGGGGATACTTCACTGACTGCTGGCCAGCCACGCTGAGGCCGCTCGCCAGGGACACTGGCGTGGCCAAGAAACTGCGTGAGGCCAGCAAGAGGCTGGTCAAACTGGCCGGAGAAACTGGAATGATTAAAACAAACTGAAGCTTTGCAAGCAAACAATGTGTGGGAATCTAATTTTTTGGTCAAACAAGCCCaaaaaattgtttttgttttgttcttAATAATTTGTTGATTTTGAATTTGTCTTCGGGGGACTTAATTCACAATAATGTCAGGTTTTTTTTATGGATGGAGAATGGATTGTTGAACATTTTATGGTTTGCCCTTCGATTGTTGACCTCAAACACTTGAATGATGAATGATGACATGTAGAAacatggctgcttttccttctgtTGTAAATAACCTCTGAAAATAACATCTGTGGCAATacaatgctgtgtgatgtcttaTTAGGATAGTGGTATGGTTTACCTCCATGAGTATTCAGAGGATGGAGGTTTATTTAGTACAACACTAGACAACACAGACAACCAGGGGTGGGACACTTAAAAGTCAATGAATACGAACCTTTAACAAATTCCAAAATCTAACAGCACCATCTACAGGAAGCAAGCAGGTGCTGGAATGTATATTTTGTTGACCTGCAATAAGTGGAACTGAAAGTAAATGTTTAACATTGCTTATAAGAGCCGAGTCGCCATTACAGGGTGTGGACATTACAGAGACGTCTCCCGATCAACTGGAATAATCACATTTcttatttgatttgacttgatatTTTACTTCATGTTAGTCGTATAAAGTGGTGGTTGTTCTAGTGACGCTTGCATTGTACGTTTTTTGTTTGATTTGAAAATCAAAGTAAACTAGGATACTGAAAGAAGATGGCAGATAGTTACCTGGATAGTTACCTGTGCTGCCATATTTGTTCAGAGACTTTCAGAGAGCCTGTTTCTCTGGGCTGCCACCACAACTTCTGTTCCAGCTGCCTGGACAAATTCTGGGATCAAGCCAAAAACAAGAATTGTCCGGTATGTAGGAGGAAATGTTCTAAGGATCATCTAAATGTTAACTTTCAGTTGAAGGAACTGTCTGATAAATATGCTGGGAGACAGAAAGCAGGGGAGAAAGACTGTATTCCAGATGAAGACAGAGAAGTGGTTTGTACTAAACACACAGATGAACCTAAATGGTTCTGTgaggtggagcagagagctgtgtgtctgtgagtttCCTGCACATCATGGACACACAGTGGTTCCCTTAGAACAGGCAGTGAAAGACCTGAAGGACAAACTAACCTCAGACTTAGACTCACTGCAGGGCAAACAGGTTAAATGGAAAGACATAGAGGAGACATACAGCCAAATGTTTCAATACTCCAAGAAGCAGCTGGTatccacagagagacagatcagAGGGGAGTTTGAGAAGCTTCACCAGTtcctgagagaggaagaggaggccagACTGGCAGCActgaggaaggaagaggaggagaaggggaagatGATTGCCAGAGAGATGAAGCACATTCAAGACCAGATCTCTTCTCTCACAGAAAACATCACTGCTGTGAAACAAGAACTACAGAAACGAGAAGTGCCATTTCTCAAgagctacaaacacacacagacattctcCAGAGCCCAGGACACACTGCCGGATCCACAGCTGGTCTCAGGAGCACTGACAGATGTGGCCAAACACCTGGGCGACCTGCAGTTCAGAGTCTGGGAGAAGATGCAGGGGATTGTCAAATACACTCCTGTGATTCTGGACCCCAACACTGCAAACAActggctctctctgtctgatGATCTGACCAGTGAGAGCAGGACAGGCCCAATGCAGCAGCTCCCTGACAACCCAGAGAGGAACACCATTTACATCACAGTTCTGAGCTCTGAGGGGTTCAGCTCAGGAAAACACAgctgggaggtggaggtgggggaccACCCTCAATGGTATATAGGCGTGGCCAAGGAGTCATTCAAAAGGCAGGAGGAAGTAAAATATTTTAACCCAGAGTTTGGAGTCTGGCTTTTAATGCTGAGAAGTGGTAAGTATCAAATAATAGATAAAACCTTCACTCTGAAGAGGAGACCCCAGAGGATCAGAGTACAGCTGGACTACGACAGGGGAGAGGTGTCCTTCTACGATCCCAAAGACATGACACACATCTATACTTTCAGAGATACATTTACTGAGAGACTCTACCCATACTTTTTTATTGGAAAGGTTGGTGATGCTGACAACACTGGTATACAGATCTGCCAATCAGAAGTGTCTCTTACAGTGAAGTCATTCCAGTGAGAGAATCAGAGTGATGTCGTTAGGTTCTGACTCATCTATACCCAGAGAATCAGAGTGATGTCGTTAGGTTGTGACTCATCTATACCCAGAGAATCAGAGTGATGTCGTTAGGTTGTGACTCATCTATAcccagagaaacagagtgatgtTGTTAGGTTGTGACTCATCTATACCAAGAGAATCAGAGTGATGTCGTTAGGTTGTGACTCATCTATACCCAGAGAATCAGAGTGATGTCGTTAGGTTGTGACATTATCAGCTGTTAAGATATTGTTTATTATATTGGTTTTTATCTATTGAATCAATACATGGGTAGCCTACTCTGTATTTCCTATGCTaatcgatgtcacaggaaggccataaagatcatcaaggacatcaaccacccgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110536393 True 2983 mRNA 0.44 2 75866632 75878332

Neighbor

gene id symbol gene type direction distance location
LOC118937399 NA coding upstream 483339 75374099 ~ 75383293 (+)
trnaw-cca-7 NA coding upstream 487801 75378760 ~ 75378831 (+)
LOC110536389 LOC106579825 coding upstream 572582 75282556 ~ 75294050 (+)
LOC110536386 LOC106579824 coding upstream 591860 75153530 ~ 75274772 (+)
LOC110536385 suds3 coding upstream 978367 74877456 ~ 74888265 (+)
LOC110535118 LOC106570809 coding downstream 232023 76110124 ~ 76131124 (+)
LOC110536397 LOC106570810 coding downstream 272069 76150401 ~ 76153720 (+)
fxn LOC100194686 coding downstream 492713 76371045 ~ 76384578 (+)
LOC110536406 LOC106570821 coding downstream 517764 76396096 ~ 76600566 (+)
LOC118937404 LOC106570822 coding downstream 739078 76617410 ~ 76662227 (+)
G1017898 LOC106570803 non-coding upstream 3436 75861462 ~ 75863196 (+)
G1017844 NA non-coding upstream 10043 75784130 ~ 75856589 (+)
G1017888 NA non-coding upstream 24053 75840790 ~ 75842579 (+)
G1017858 NA non-coding upstream 65573 75800721 ~ 75801059 (+)
G1017777 NA non-coding upstream 173603 75692804 ~ 75693029 (+)
G1017906 NA non-coding downstream 1298 75879630 ~ 75886132 (+)
G1017907 LOC106570802 non-coding downstream 7890 75886222 ~ 75886457 (+)
G1017908 NA non-coding downstream 8697 75887029 ~ 75887299 (+)
G1017909 NA non-coding downstream 9032 75887364 ~ 75888261 (+)
G1017910 NA non-coding downstream 13378 75891710 ~ 75891993 (+)
G1017593 NA other upstream 537895 75269723 ~ 75328737 (+)
LOC110535110 LOC106579812 other upstream 2698190 73155366 ~ 73254792 (+)
G1014834 NA other upstream 3105687 72760521 ~ 72760945 (+)
G1013922 NA other upstream 3986960 71879296 ~ 71879672 (+)
G1013617 NA other upstream 4026162 71838302 ~ 71840882 (+)
G1018678 NA other downstream 645806 76524138 ~ 76525567 (+)
G1019189 ptar1 other downstream 940173 76818505 ~ 76821968 (+)
mamdc2a LOC106570826 other downstream 1011395 76889699 ~ 76939449 (+)
LOC110536414 NA other downstream 1255559 77131426 ~ 77139724 (+)

Expression


Co-expression Network