XLOC_002852 (bsx)


Basic Information

Item Value
gene id XLOC_002852
gene name bsx
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29890535 ~ 29892486 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005283
ATGAATCTGAACTACACGTCTCCGGTGCCCCAGATGCCGACTCAAAGGTCAACGTCGTTCTTCATTGAAGATATTTTACTACATAAACCTAAACCTTTGCGGGAGGTGTTTCCCTCGCCTTTTTCGAACTCTATTGCCTCCCGGATGCCTCTTTTAGAGTATGGATATCCCCTTATGCCTACACCGATACTGGCTCCTCATCCGCATCATCCGTTACACAAACCTGAACACCATCCGTACTTTTTCACCTCTGGAATGCAGATGCCAGCGTTATTTCAGCATCATCCGGAATTACCAGGAAAGCATTGCAGACGCAGAAAGGCCAGAACAGTGTTCTCAGACTCACAGTTATCCGGACTCGAGAAAAGGTTCGAGATCCAGAGATATTTGTCCACACCTGAGCGCGTGGAACTGGCTACAGCTCTCAGTCTATCGGAAACACAGGTAAAGACGTGGTTTCAAAACCGGAGGATGAAGCATAAAAAACAGCTGAGGAAAACACAAGACGACCAGAAAACCCCGAATGATGTAgacagatcgctggagaacacgAGCGAAAGCGAAATGCACGAGAAAAACACAGACGGTAAAAACGGCATGAGCCCGGACAGATACACGCTGGACGACAATGAAGATGATGTCGATATTGAAGATGACATTTGCTCTCCTGAACATTTACTCTAGTAGCTATTATTACACTACATCAACAAAAAATGTACATATGAATACAATCTTTTAGATAGGAaagtatatatagttttttttttatatatattattattttgaaaacatcGATTTTTGTTAAACTGTTTAAGCGCTTAAACATTTTGGACAGCTAAAGGACATTAAACTTacgtttttattcattattattattattattattgttgttgttattatagtcATTGCTTTGTGACTAAcaacaatttttttaagtaaatgtggAATGAATGGTACTTAATGTACGGACAATCTGT

Function

symbol description
bsx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within pineal gland development. Predicted to be located in nucleus. Is expressed in forebrain. Orthologous to human BSX (brain specific homeobox).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0021982 pineal gland development biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040628-4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within pineal gland development. Predicted to be located in nucleus. Is expressed in forebrain. Orthologous to human BSX (brain specific homeobox).

Ensembl:

ensembl_id ENSDARG00000068976

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005283 True 977 mRNA 0.40 3 29890535 29892486

Neighbor

gene id symbol gene type direction distance location
XLOC_002851 zpr1 coding downstream 58591 29820172 ~ 29831944 (-)
XLOC_002850 hist2h2l coding downstream 74068 29815644 ~ 29816467 (-)
XLOC_002849 si:ch73-261i21.5 coding downstream 81430 29793817 ~ 29809105 (-)
XLOC_002848 vps11 coding downstream 121979 29751029 ~ 29768556 (-)
XLOC_002847 ift46 coding downstream 145614 29735900 ~ 29744921 (-)
XLOC_002853 lim2.1 coding upstream 3789 29896275 ~ 29903165 (-)
XLOC_002854 CT737197.1 coding upstream 638657 30531143 ~ 30531257 (-)
XLOC_002855 opcml coding upstream 725340 30617826 ~ 30785501 (-)
XLOC_002856 panx3 coding upstream 1104752 30997238 ~ 31016806 (-)
XLOC_002857 pknox2 coding upstream 1127121 31019607 ~ 31220558 (-)
XLOC_002845 CU861448.1 non-coding downstream 182353 29708068 ~ 29708182 (-)
XLOC_002843 NA non-coding downstream 399448 29266270 ~ 29491087 (-)
XLOC_002841 BX005332.1 non-coding downstream 752531 29128202 ~ 29138004 (-)
XLOC_002838 BX537347.1 non-coding downstream 966902 28923517 ~ 28923633 (-)
XLOC_002837 BX537347.2 non-coding downstream 968284 28922135 ~ 28922251 (-)
XLOC_002858 NA non-coding upstream 1370366 31262852 ~ 31295006 (-)
XLOC_002862 NA non-coding upstream 2185325 32077811 ~ 32084624 (-)
XLOC_002863 NA non-coding upstream 2323927 32216413 ~ 32250846 (-)
XLOC_002867 NA non-coding upstream 2692199 32584685 ~ 32591462 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_14377465_14379055 BSX coding CI01000304 null 14376532 ~ 14379055 (-)