XLOC_002843


Basic Information

Item Value
gene id XLOC_002843
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29266270 ~ 29491087 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006075
tacttttttttataatttaagCTTATTTACAGTTGATATTGTGCCGTGAACTGGCAAAAAGCACTGTCTTCATCTTAGGAGTTAACCAGTTCTGTGCAGTCTTCAATATCTTGATCCTTACCATGGATTTCAGCAGTCATGGATGTTCTGTGACCCGGTCGTTCAGCATGGGCGGACCAAGCACCTAGAAGAAAACTGTCAACAAGTTTAGCAGTAACTTGTATTGAAAGCAAGTTCAACAGACATGCTATTCAAGCTCTGCATATTTAAACAGTTAACTATCTTTGACGACTACTGTCGTCATGTCCCCTCATTTACATCTTGTGTAAAGTTCAGTCTTGGAAACGGTGAAAAGGTAAAATACTTGACCCTACATTTTATGTGACAAGCTTGAACTCTCTGCACACTTGGTGCAGAATTCCACCGAGACATGGTCTTTGTCCACATGCAGGCAGACGCCACCTGCAGTTTCTTTGTCTTCCACCTTCACCCTCTTCATCGGCATGGCATAATCGTGGTCGTTCTCATTGGGTTCCTGGAAAAGCGAGGTAGAAAATTTCATGCCGTTCACACCGCTCAATCTAGACAACAGCTGAGCCAGCATGCTCTCATTAGCCAACACGGCTCTCAAGTACCTAGTTTCATTCTCCAACTCTTCCACTCTCTTGTTGAGATTTCCGTTTTCCTGCTTGAGCACGCGGTTTTCTGTAGTCAAAGAGCCAACTCTCTGCTCCAAGCCACTGACGTATTCTTTCTTCTTTAATCGGTTTATCCTTGCAGCTATGGCGTTCTTGTTGATGATCCGGCCGGAGACGTCTAGTAGTTTTGACCTCTGGACCATACGTGATGCGGAAACATCAAGCTCTGCACTTTGGATTGTTTCATTGTAGACTGATGTCTGCGATTCAAAGCTGCTGAAAGCTTCAAGCATATCCTTGTCCAGGTCCCAGTTGAACTCGGAGCCAAGCAGATCATCCAAGCCCCAATCGTTGGTGTCGCTTTCTGGAGAGGTGTGCGTGTTTGTTTCACTTGCACTACTGGTTTTTGAAGCGTCAACAGTCTCATGGGAAGTGCTTGAACATGTGGTATTTGTGTTAATGCTGCTTCTTCCTCTTTTTCTGGTGATCATGTTCGTGTTTCAGGATATTGAGAACACTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006075 True 1158 lncRNA 0.44 2 29266270 29491087

Neighbor

gene id symbol gene type direction distance location
XLOC_002842 ccdc83 coding downstream 29410 29226180 ~ 29236860 (-)
XLOC_002841 BX005332.1 coding downstream 128266 29128202 ~ 29138004 (-)
XLOC_002840 zpld1a coding downstream 145735 29112756 ~ 29120535 (-)
XLOC_002839 si:ch211-103f14.3 coding downstream 164421 29087810 ~ 29101849 (-)
XLOC_002838 BX537347.1 coding downstream 342637 28923517 ~ 28923633 (-)
XLOC_002845 CU861448.1 coding upstream 216981 29708068 ~ 29708182 (-)
XLOC_002846 si:ch73-261i21.2 coding upstream 239973 29731060 ~ 29733194 (-)
XLOC_002847 ift46 coding upstream 244813 29735900 ~ 29744921 (-)
XLOC_002848 vps11 coding upstream 259942 29751029 ~ 29768556 (-)
XLOC_002849 si:ch73-261i21.5 coding upstream 302730 29793817 ~ 29809105 (-)
XLOC_002837 BX537347.2 non-coding downstream 344019 28922135 ~ 28922251 (-)
XLOC_002834 NA non-coding downstream 801244 28460213 ~ 28465026 (-)
XLOC_002833 CR392341.3 non-coding downstream 811099 28454500 ~ 28455171 (-)
XLOC_002854 CT737197.1 non-coding upstream 1040056 30531143 ~ 30531257 (-)
XLOC_002858 NA non-coding upstream 1771765 31262852 ~ 31295006 (-)
XLOC_002862 NA non-coding upstream 2586724 32077811 ~ 32084624 (-)
XLOC_002863 NA non-coding upstream 2725326 32216413 ~ 32250846 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_14005720_14006514 CREBZF coding CI01000304 null 14005720 ~ 14006860 (+)