RNA id: TCONS_00006075


Basic Information

Item Value
RNA id TCONS_00006075
length 1158
lncRNA type read_through
GC content 0.44
exon number 2
gene id XLOC_002843
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29266270 ~ 29491087 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tacttttttttataatttaagCTTATTTACAGTTGATATTGTGCCGTGAACTGGCAAAAAGCACTGTCTTCATCTTAGGAGTTAACCAGTTCTGTGCAGTCTTCAATATCTTGATCCTTACCATGGATTTCAGCAGTCATGGATGTTCTGTGACCCGGTCGTTCAGCATGGGCGGACCAAGCACCTAGAAGAAAACTGTCAACAAGTTTAGCAGTAACTTGTATTGAAAGCAAGTTCAACAGACATGCTATTCAAGCTCTGCATATTTAAACAGTTAACTATCTTTGACGACTACTGTCGTCATGTCCCCTCATTTACATCTTGTGTAAAGTTCAGTCTTGGAAACGGTGAAAAGGTAAAATACTTGACCCTACATTTTATGTGACAAGCTTGAACTCTCTGCACACTTGGTGCAGAATTCCACCGAGACATGGTCTTTGTCCACATGCAGGCAGACGCCACCTGCAGTTTCTTTGTCTTCCACCTTCACCCTCTTCATCGGCATGGCATAATCGTGGTCGTTCTCATTGGGTTCCTGGAAAAGCGAGGTAGAAAATTTCATGCCGTTCACACCGCTCAATCTAGACAACAGCTGAGCCAGCATGCTCTCATTAGCCAACACGGCTCTCAAGTACCTAGTTTCATTCTCCAACTCTTCCACTCTCTTGTTGAGATTTCCGTTTTCCTGCTTGAGCACGCGGTTTTCTGTAGTCAAAGAGCCAACTCTCTGCTCCAAGCCACTGACGTATTCTTTCTTCTTTAATCGGTTTATCCTTGCAGCTATGGCGTTCTTGTTGATGATCCGGCCGGAGACGTCTAGTAGTTTTGACCTCTGGACCATACGTGATGCGGAAACATCAAGCTCTGCACTTTGGATTGTTTCATTGTAGACTGATGTCTGCGATTCAAAGCTGCTGAAAGCTTCAAGCATATCCTTGTCCAGGTCCCAGTTGAACTCGGAGCCAAGCAGATCATCCAAGCCCCAATCGTTGGTGTCGCTTTCTGGAGAGGTGTGCGTGTTTGTTTCACTTGCACTACTGGTTTTTGAAGCGTCAACAGTCTCATGGGAAGTGCTTGAACATGTGGTATTTGTGTTAATGCTGCTTCTTCCTCTTTTTCTGGTGATCATGTTCGTGTTTCAGGATATTGAGAACACTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005269 lncRNA downstream 128266 29128202 ~ 29138004 (-) True XLOC_002841
TCONS_00006074 lncRNA downstream 801244 28460213 ~ 28465026 (-) True XLOC_002834
TCONS_00005770 lncRNA downstream 848091 28417651 ~ 28418179 (-) True XLOC_002830
TCONS_00006073 lncRNA downstream 880701 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00006072 lncRNA downstream 880716 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00005294 lncRNA upstream 1771765 31262852 ~ 31294777 (-) False XLOC_002858
TCONS_00006076 lncRNA upstream 1771765 31262852 ~ 31295006 (-) True XLOC_002858
TCONS_00006077 lncRNA upstream 2586724 32077811 ~ 32084121 (-) False XLOC_002862
TCONS_00006078 lncRNA upstream 2586724 32077811 ~ 32084624 (-) True XLOC_002862
TCONS_00006079 lncRNA upstream 2725326 32216413 ~ 32250771 (-) False XLOC_002863
TCONS_00005270 mRNA downstream 29410 29226180 ~ 29236860 (-) True XLOC_002842
TCONS_00005268 mRNA downstream 145735 29113437 ~ 29120535 (-) True XLOC_002840
TCONS_00005267 mRNA downstream 145755 29112756 ~ 29120515 (-) False XLOC_002840
TCONS_00005265 mRNA downstream 164421 29087810 ~ 29101849 (-) False XLOC_002839
TCONS_00005274 mRNA upstream 239973 29731060 ~ 29733194 (-) True XLOC_002846
TCONS_00005275 mRNA upstream 244813 29735900 ~ 29744921 (-) False XLOC_002847
TCONS_00005277 mRNA upstream 259942 29751029 ~ 29768556 (-) True XLOC_002848
TCONS_00005278 mRNA upstream 302730 29793817 ~ 29809105 (-) True XLOC_002849
TCONS_00005279 mRNA upstream 324557 29815644 ~ 29816467 (-) True XLOC_002850
TCONS_00005263 other downstream 342637 28923517 ~ 28923633 (-) True XLOC_002838
TCONS_00005262 other downstream 344019 28922135 ~ 28922251 (-) True XLOC_002837
TCONS_00005252 other downstream 811099 28454500 ~ 28455171 (-) True XLOC_002833
TCONS_00005251 other downstream 817402 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005250 other downstream 822530 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005273 other upstream 216981 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005276 other upstream 245099 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005286 other upstream 1040056 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005293 other upstream 1530269 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005308 other upstream 3051449 32542536 ~ 32610769 (-) False XLOC_002866

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_14005720_14006514.mRNA True 1141 mRNA 0.46 1 CI01000304 14005720 ~ 14006860 (+)