RNA id: TCONS_00006074


Basic Information

Item Value
RNA id TCONS_00006074
length 1489
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_002834
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28460213 ~ 28465026 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTTTCACTGTTACAGctctttttcctttttattaagactttaataataataatgatgtttgACCTTTTATTTGTTTCGCTTTTAAAGTCACCGATTTTTCTTCTATAAATGATATTGTCTGTGAATTTACGAACTTATAACTAATAAGGTTTTTTTTGTACTTCTTCGAAATACTGTATTTAATTTGTTCTCCCTAGAACACCTGCTATAGGATGCTGTTTTTCTTCGCTTTGTTCGTAACATTTCGTTTAGAATCCTCAGGCTTTTCTGAGATGTGCTCTACTGGATCGAGACTGTTGTCAAAAGCTCATATACAAATCTCTGTGTATATATACCTATGCTTACCTGTTAAGCCAACAAGCACTGATTAAGAATGCACCGCCTCTAGACGATTAGTTCCTGCTTATGGACGTGCACGTGCGAGGCAACCGCATGAGAAAACAAAAAGAATTGCTAGTGAGAATTATAATGCGTTGAATGAAAACACGGCTTATTTGTCCCCGCATGATGCATCTTTAGAATCTGATCCCATCCCATAACACCCCCTGTCATATGAAGTTCACCCCACTTTTTTCTATTTAGATGATGCCTCTTAGCAAAAATGCCTCTATGAGAAATTCCTATATTAGCTATAAAGATGATGATATTTACCCTTTTGTGCTAGATTGTCTCTTGAATGTAATGAATTTTGTACCTGTATTTTTCTAATTCCAATCCAGTCTTTCTGTATGGCGGTGGCTTTGTATGGAGGAACTCTAGGCTGCTTCCTTGACgtcaataatttataaaaacttCCAGTCATCCTCAATACACAAAATCCTGACCTCTTTAGTGCGCAGTTCTGCTGCCGCCATCATATCGGACTTGCAAACAACCTTTGCTTTCACACAACTGAGACATGCAATATTATAGCGATCACGGATATCGGTTGCCAAACGTTCACTTATTCAGCTCTTAATAATCTTAAATATGCACCCCGTCAACCGTTGAGGATTTTTTCTCGTTCGCTCTttctgttattgttgttgtttttctgctCTGTACGAGAATGTACGTTCATGGCTTTAGATGCAGTTGTGGCGCCGTCTTTTTAAACGCTTATCCGAGATCCTGTTTCCCCGAATTCTCTACGGAGTTTATACTTGTGTGCTTGATCTGATTATTGTCACTAGTACTGTATGATGCAATGTATGGATCTGATTGTTACAGCCCAGTTGTTGATGCAGCCTTGCCTTACTGACCCCTGCGTAGAGAGAGGGACCCCTTTTTGCCATTGCCCTTCTCACTGAGTCTTATGTCATAACACTGTCTGCTGACGCAAATGTTATTCTTTAAACACCTATTAAAGTAACATACATATGAGGAACGTGGCTGcttcatgtcttgatttttattttatttaagaatattgtttttttttttacactcaccggccactttattaggtacacccgttcaacacaaatttctaaacagctaatcacatg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005770 lncRNA downstream 42034 28417651 ~ 28418179 (-) True XLOC_002830
TCONS_00006073 lncRNA downstream 74644 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00006072 lncRNA downstream 74659 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00006071 lncRNA downstream 74659 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00005242 lncRNA downstream 138389 28320244 ~ 28321824 (-) True XLOC_002826
TCONS_00005269 lncRNA upstream 663176 29128202 ~ 29138004 (-) True XLOC_002841
TCONS_00006075 lncRNA upstream 801244 29266270 ~ 29491087 (-) True XLOC_002843
TCONS_00005294 lncRNA upstream 2797826 31262852 ~ 31294777 (-) False XLOC_002858
TCONS_00006076 lncRNA upstream 2797826 31262852 ~ 31295006 (-) True XLOC_002858
TCONS_00006077 lncRNA upstream 3612785 32077811 ~ 32084121 (-) False XLOC_002862
TCONS_00005249 mRNA downstream 64593 28392426 ~ 28395620 (-) True XLOC_002829
TCONS_00005247 mRNA downstream 79294 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005253 mRNA upstream 5281 28470307 ~ 28513861 (-) False XLOC_002835
TCONS_00005254 mRNA upstream 5281 28470307 ~ 28525611 (-) False XLOC_002835
TCONS_00005255 mRNA upstream 8483 28473509 ~ 28477023 (-) False XLOC_002835
TCONS_00005256 mRNA upstream 12366 28477392 ~ 28483672 (-) False XLOC_002835
TCONS_00005257 mRNA upstream 33351 28498377 ~ 28519309 (-) False XLOC_002835
TCONS_00005252 other downstream 5042 28454500 ~ 28455171 (-) True XLOC_002833
TCONS_00005251 other downstream 11345 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005250 other downstream 16473 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005248 other downstream 87728 28371209 ~ 28372485 (-) True XLOC_002827
TCONS_00005238 other downstream 167254 28292843 ~ 28292959 (-) True XLOC_002825
TCONS_00005262 other upstream 457109 28922135 ~ 28922251 (-) True XLOC_002837
TCONS_00005263 other upstream 458491 28923517 ~ 28923633 (-) True XLOC_002838
TCONS_00005273 other upstream 1243042 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005276 other upstream 1271160 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005286 other upstream 2066117 30531143 ~ 30531257 (-) True XLOC_002854

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU986030 True 3470 TUCP 0.37 1 NC_048574.1 21485499 ~ 21488968 (+)