RNA id: TCONS_00005238


Basic Information

Item Value
RNA id TCONS_00005238
length 117
RNA type rRNA
GC content 0.52
exon number 1
gene id XLOC_002825
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28292843 ~ 28292959 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtcacagccatatcaccctgcagcccaagaccagttactcactgaagctaagcagcgctgagcctggtcagtacctggatttgagaccacatgggaaagcaaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000188502

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005769 lncRNA downstream 854 28276683 ~ 28291989 (-) True XLOC_002823
TCONS_00006069 lncRNA downstream 1161 28197916 ~ 28291682 (-) False XLOC_002823
TCONS_00006068 lncRNA downstream 1164 28197916 ~ 28291679 (-) False XLOC_002823
TCONS_00006067 lncRNA downstream 1543 28197916 ~ 28291300 (-) False XLOC_002823
TCONS_00006066 lncRNA downstream 1543 28197916 ~ 28291300 (-) False XLOC_002823
TCONS_00005241 lncRNA upstream 24458 28317417 ~ 28318086 (-) False XLOC_002826
TCONS_00005242 lncRNA upstream 27285 28320244 ~ 28321824 (-) True XLOC_002826
TCONS_00006072 lncRNA upstream 89126 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00006071 lncRNA upstream 89126 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00006073 lncRNA upstream 89126 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00005236 mRNA downstream 99201 28172344 ~ 28193642 (-) True XLOC_002822
TCONS_00005234 mRNA downstream 174808 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005233 mRNA downstream 174808 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005235 mRNA downstream 175103 28030042 ~ 28117740 (-) True XLOC_002821
TCONS_00005232 mRNA downstream 265353 28026827 ~ 28027490 (-) True XLOC_002820
TCONS_00005239 mRNA upstream 18072 28311031 ~ 28368913 (-) False XLOC_002826
TCONS_00005240 mRNA upstream 19254 28312213 ~ 28368695 (-) False XLOC_002826
TCONS_00005243 mRNA upstream 77857 28370816 ~ 28380928 (-) False XLOC_002827
TCONS_00005247 mRNA upstream 77859 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005246 mRNA upstream 77859 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005237 other downstream 93802 28198894 ~ 28199041 (-) False XLOC_002823
TCONS_00005228 other downstream 878481 27414246 ~ 27414362 (-) True XLOC_002819
TCONS_00005218 other downstream 1122771 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005214 other downstream 1283719 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005203 other downstream 1548712 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005248 other upstream 78250 28371209 ~ 28372485 (-) True XLOC_002827
TCONS_00005250 other upstream 149781 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005251 other upstream 154947 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005252 other upstream 161541 28454500 ~ 28455171 (-) True XLOC_002833
TCONS_00005262 other upstream 629176 28922135 ~ 28922251 (-) True XLOC_002837

Expression Profile

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