XLOC_002834


Basic Information

Item Value
gene id XLOC_002834
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28460213 ~ 28465026 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006074
CTCTTTCACTGTTACAGctctttttcctttttattaagactttaataataataatgatgtttgACCTTTTATTTGTTTCGCTTTTAAAGTCACCGATTTTTCTTCTATAAATGATATTGTCTGTGAATTTACGAACTTATAACTAATAAGGTTTTTTTTGTACTTCTTCGAAATACTGTATTTAATTTGTTCTCCCTAGAACACCTGCTATAGGATGCTGTTTTTCTTCGCTTTGTTCGTAACATTTCGTTTAGAATCCTCAGGCTTTTCTGAGATGTGCTCTACTGGATCGAGACTGTTGTCAAAAGCTCATATACAAATCTCTGTGTATATATACCTATGCTTACCTGTTAAGCCAACAAGCACTGATTAAGAATGCACCGCCTCTAGACGATTAGTTCCTGCTTATGGACGTGCACGTGCGAGGCAACCGCATGAGAAAACAAAAAGAATTGCTAGTGAGAATTATAATGCGTTGAATGAAAACACGGCTTATTTGTCCCCGCATGATGCATCTTTAGAATCTGATCCCATCCCATAACACCCCCTGTCATATGAAGTTCACCCCACTTTTTTCTATTTAGATGATGCCTCTTAGCAAAAATGCCTCTATGAGAAATTCCTATATTAGCTATAAAGATGATGATATTTACCCTTTTGTGCTAGATTGTCTCTTGAATGTAATGAATTTTGTACCTGTATTTTTCTAATTCCAATCCAGTCTTTCTGTATGGCGGTGGCTTTGTATGGAGGAACTCTAGGCTGCTTCCTTGACgtcaataatttataaaaacttCCAGTCATCCTCAATACACAAAATCCTGACCTCTTTAGTGCGCAGTTCTGCTGCCGCCATCATATCGGACTTGCAAACAACCTTTGCTTTCACACAACTGAGACATGCAATATTATAGCGATCACGGATATCGGTTGCCAAACGTTCACTTATTCAGCTCTTAATAATCTTAAATATGCACCCCGTCAACCGTTGAGGATTTTTTCTCGTTCGCTCTttctgttattgttgttgtttttctgctCTGTACGAGAATGTACGTTCATGGCTTTAGATGCAGTTGTGGCGCCGTCTTTTTAAACGCTTATCCGAGATCCTGTTTCCCCGAATTCTCTACGGAGTTTATACTTGTGTGCTTGATCTGATTATTGTCACTAGTACTGTATGATGCAATGTATGGATCTGATTGTTACAGCCCAGTTGTTGATGCAGCCTTGCCTTACTGACCCCTGCGTAGAGAGAGGGACCCCTTTTTGCCATTGCCCTTCTCACTGAGTCTTATGTCATAACACTGTCTGCTGACGCAAATGTTATTCTTTAAACACCTATTAAAGTAACATACATATGAGGAACGTGGCTGcttcatgtcttgatttttattttatttaagaatattgtttttttttttacactcaccggccactttattaggtacacccgttcaacacaaatttctaaacagctaatcacatg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006074 True 1489 lncRNA 0.38 2 28460213 28465026

Neighbor

gene id symbol gene type direction distance location
XLOC_002833 CR392341.3 coding downstream 5042 28454500 ~ 28455171 (-)
XLOC_002832 CR392341.2 coding downstream 11345 28447906 ~ 28448868 (-)
XLOC_002831 CR392341.1 coding downstream 16473 28442740 ~ 28443740 (-)
XLOC_002830 NA coding downstream 42034 28417651 ~ 28418179 (-)
XLOC_002829 CR392341.4 coding downstream 64593 28392426 ~ 28395620 (-)
XLOC_002835 bbx coding upstream 5281 28470307 ~ 28525611 (-)
XLOC_002836 alcama coding upstream 266723 28731749 ~ 28835812 (-)
XLOC_002837 BX537347.2 coding upstream 457109 28922135 ~ 28922251 (-)
XLOC_002838 BX537347.1 coding upstream 458491 28923517 ~ 28923633 (-)
XLOC_002839 si:ch211-103f14.3 coding upstream 622784 29087810 ~ 29101849 (-)
XLOC_002828 NA non-coding downstream 74644 28382085 ~ 28385569 (-)
XLOC_002841 BX005332.1 non-coding upstream 663176 29128202 ~ 29138004 (-)
XLOC_002843 NA non-coding upstream 801244 29266270 ~ 29491087 (-)
XLOC_002845 CU861448.1 non-coding upstream 1243042 29708068 ~ 29708182 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110533503 LOC106603655 misc NC_048574.1 CM023228.2 21444502 ~ 21488968 (+)