XLOC_002836 (alcama)


Basic Information

Item Value
gene id XLOC_002836
gene name alcama
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28731749 ~ 28835812 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005259
GGAGCTGCCTGCCGACGGTTATAGGTCTGTACGGTGAGACCATCGAAGTGCCATGCAACAATGGAAATAACAAGCCAGATGGCCTTATTTTCACCAAATGGAAATATGTGAAAGATGACGGCTCCCCTGGCGATCTACTAATAAAGCAGGCACAGAAAGATGATCCGACTGTGTCTGCCATGGACGGCTACAAAACTAGAGTTAGCATCGCTGCTAATTCCAGCTTACTGATTGCCCAGGGCTCTTTGACTGACCAGAGAGTCTTCACCTGCATGGTGGTGTCTTCAACTAATCTGGAGGAATTCTCTGTGGAAGTTAAAGTTCACAAAAAACCATCAGCCCCTGTAATCAAAAACAAAGTGAAAGAACTGGAAAATGGCAAACTGACGCAGttgGGGGAATGTGTGGTGGAGAGCGCCAACCCAGCAGCAGATCTCATCTGGATGAAGAACAACCAGGCTCTGGTGGATGATGGCAAGACGATCATTATCACATCAGATGTCACCAAGGACCCAGTCACCGGTCTGTCCAGCACCTCTTCCAGACTGCAGTACACAGCAAGGAAAGAGGATGTGGCATCACAGTTCACCTGCGTTGCAAAGCACGTGACGGGACCCAACCAGGTTTCAACACCCGATACCTTCCAAATTCGCTATCCCACTGAGAAGGTGAGTCTACAGGTTGTCTCTCAGAGCCCCATTAGGGAAGGTGATGATGTGACTCTGAAATGCCAGGCGGACGGAAACCCTCCTCCTACCAGCTTCAACTTTAACATTAAGGGAAAGAAGGTCACGGTGACGGACAAGGATGTCTACACACTGACCGGCGTCACCCGAGCCGACAGCGGTGTGTACAAGTGCTCTCTGCTTGACAACGATGTGATGGAGTCCACTCAGATCGTCACAGTGAGCTtTCTGGATGCAAGCCTCACTCCTACAGGCAAGGTGTTAAAAAAGCTCGGGGAAAACTTGGTAGTGTCTTTGGAGAAGAATGCCTCTTCTGAAGTAAAAGTGACGTGGACTAAGGATAACCGTAAACTGGACAAACTGCCTGATTTCTCCCAGTTGAGATACAGCGACGCGGGCTTATACGTGTGTGATGTGTCCATTGAAGGAATCAAACACAGCTTTTCCTTCGAGCTTACTGTGGAAGGTGGTCCAAGAATTACCGGCCTGACAAAGCATCGCAGCAATGACGGAAAACACAAAGTGTTGACGTGCGAGGCAGAAGGTTCACCTAAACCTGAAGTGCAGTGGAGTGTCAACGGAACCGACGATGAAACATCGTATGTCAACGGAAAAGCCACATACAAACTGACGGTGGTCCCGAGTAAGAACCTCACCGTCAGCTGCCTCGTGACCAATAAACTCGGTTTCGACACAAAGGACATCAGCGTGTTTTCCCTATTTGAGGAGGACAAGCCCAAACCAGGAAAAAATGAAGATGGCGCAGACCAGGCCAAAGTGATTGTGGGTGTCGTGGTTGGACTGTTTCTAGCCGCTGCCCTGGTGGGACTCATCTACTGGTTGTATATCAAGAAAACAAGACAAGGCAGCTGGAAGACCGGAGAGAAGGAGACTGGCACTTCAGAGGAGAGTAAGAAACTGGAGGAGAACAATCATAAAGCAGATGTCTAAGAGTGGAGAGAGCCGTCAAACGGAACGAAGAAGGTTTGAACCAGGAAAGAGGCCTTGTCACACTGAATGTGCAGTACTACACACTTCGATCATCTTATTCCAGACATCTGATTGGACGGCGACGCCTCCTTCTGGCTGCTCGTGCGCATACCGCATCGCAGAATGTTTCCAAAATATTTCCTACTCCAAACAAACAATttcctaaaaaagaaaaaaagcaaagaaaaaaaaagaaagaaagaaagaaatcccACCACCACGATCCAAGAGTGTAAAACCACTTGTGTTGTAAATTTAGTCTGCACTGAGGactgcttttatttttgatcGATTGCGATGTTTTCTTTTTGTGTTCCCCGTGAATGTTCTTCGTTTCATACGCATTGCTGATGTGGTGGGCACAGCCGTTTTGTTTCCCTTCtagtattaaaaaaagaaaatgtaaattcGCTGTACACTTTTTAGGCCTGTGTAAATAAGTCAGGGGAGTGCATTCACTCTGCTTAACGttgggattattattatttaaaaaaagaataaggaTTGTGGGACTACATATCGAAACTGCACAGTCCCTTCGGAAAAACAAACACCCAAGATCGCAGTCGGATGCTGGAAGAACGATGACTTCACTGCTGTTACACCTCTGTTCGCTCATCTTTTATTTATTGATACCTCTTCATGTTGTTTCCTCTAGTTCGAAAGTGGCTAAGTAGTGAAACGGGTTTAGACAATTAGCATAGCATAGGGAAATATCCTGCTACACCCAGTGGCCTTCAGGTTGCACTGCATGATGTCATAGTTGTAGGAGTTCAGCAGAATCCAACGTAGCGACTTAGACGTGCATTCAATAGAAATAAGCAAACATCCCACTCTCGGTTTCAATCTGGGTGCTAGCAACCTTGCATGCAGAGCCTTTATTTTTGTGGGTAGGAAGTAAACTATTAAAGGATAGCCCCTTATTCTGCCTTAACAGAAAGAGTTGGAAACGAATCCAAGTATGTTAATGTGAAACCTCACTGTATAGCCTTTTCGGTTTTGCACTTCCCTCAGACTACATTTCATTTTCTGTATGTAAAGCATTTGTCAGGTTGATGTCCTACACTGTAGTCTTTAGGGATGGTCTGAAGCGATTGTTTTTCCGTTCATTGTGGTCTGAAGAAGCTGTAAATATGTTTGACTTGTGTTCGGCTATTTATAAAAGTGTGAGAAGGATAGCTGTGCTTCTGCTTAGTCACTAAAGAGACCCTTTTCAGTTCTAATGTACTCATCACGGATGTTTCGAAGAAATCTAGCGCTCACTTTTTTGTTTTGCTCCACAAAACGAGTGTTTTGAATGTTCACGCATATTTTGAACCATCAGGTCAGCAGTGAAACCAAAGAGGGTAACCGCAAAAGAAGGCCATAAAGTATTGTAAATACTGACTTTTGTTTTTGTACttttgttgacaataaaagtgtaaattttaattaaa
>TCONS_00005260
CCCGTCTAAGCTCCAGACTCCACCTGCGCTCTGTAGAGCAACCCGTCTGATCTTTCAGCGCACTCAACTCTCAATACTATCTAACAACTTCAGACCTACATCTCTCTCTATTGAGACTGTCGCCGGACTGTATAAAGGAGAACCGGGGTTTTCTTTAAGGATGCATTCGGTTATCTGCCTTTTCGGTGCCTTCATAGCTGCCGCTGTGTTTGCTCCAGGGAGCTGCCTGCCGACGGTTATAGGTCTGTACGGTGAGACCATCGAAGTGCCATGCAACAATGGAAATAACAAGCCAGATGGCCTTATTTTCACCAAATGGAAATATGTGAAAGATGACGGCTCCCCTGGCGATCTACTAATAAAGCAGGCACAGAAAGATGATCCGACTGTGTCTGCCATGGACGGCTACAAAACTAGAGTTAGCATCGCTGCTAATTCCAGCTTACTGATTGCCCAGGGCTCTTTGACTGACCAGAGAGTCTTCACCTGCATGGTGGTGTCTTCAACTAATCTGGAGGAATTCTCTGTGGAAGTTAAAGTTCACAAAAAACCATCAGCCCCTGTAATCAAAAACAAAGTGAAAGAACTGGAAAATGGCAAACTGACGCAGttgGGGGAATGTGTGGTGGAGAGCGCCAACCCAGCAGCAGATCTCATCTGGATGAAGAACAACCAGGCTCTGGTGGATGATGGCAAGACGATCATTATCACATCAGATGTCACCAAGGACCCAGTCACCGGTCTGTCCAGCACCTCTTCCAGACTGCAGTACACAGCAAGGAAAGAGGATGTGGCATCACAGTTCACCTGCGTTGCAAAGCACGTGACGGGACCCAACCAGGTTTCAACACCCGATACCTTCCAAATTCGCTATCCCACTGAGAAGGTGAGTCTACAGGTTGTCTCTCAGAGCCCCATTAGGGAAGGTGATGATGTGACTCTGAAATGCCAGGCGGACGGAAACCCTCCTCCTACCAGCTTCAACTTTAACATTAAGGGAAAGAAGGTCACGGTGACGGACAAGGATGTCTACACACTGACCGGCGTCACCCGAGCCGACAGCGGTGTGTACAAGTGCTCTCTGCTTGACAACGATGTGATGGAGTCCACTCAGATCGTCACAGTGAGCTtTCTGGATGCAAGCCTCACTCCTACAGGCAAGGTGTTAAAAAAGCTCGGGGAAAACTTGGTAGTGTCTTTGGAGAAGAATGCCTCTTCTGAAGTAAAAGTGACGTGGACTAAGGATAACCGTAAACTGGACAAACTGCCTGATTTCTCCCAGTTGAGATACAGCGACGCGGGCTTATACGTGTGTGATGTGTCCATTGAAGGAATCAAACACAGCTTTTCCTTCGAGCTTACTGTGGAAGGTGGTCCAAGAATTACCGGCCTGACAAAGCATCGCAGCAATGACGGAAAACACAAAGTGTTGACGTGCGAGGCAGAAGGTTCACCTAAACCTGAAGTGCAGTGGAGTGTCAACGGAACCGACGATGAAACATCGTATGTCAACGGAAAAGCCACATACAAACTGACGGTGGTCCCGAGTAAGAACCTCACCGTCAGCTGCCTCGTGACCAATAAACTCGGTTTCGACACAAAGGACATCAGCGTGTTTTCCCTATTTGAGGAGGACAAGCCCAAACCAGGAAAAAATGAAGATGGCGCAGACCAGGCCAAAGTGATTGTGGGTGTCGTGGTTGGACTGTTTCTAGCCGCTGCCCTGGTGGGACTCATCTACTGGTTGTATATCAAGAAAACAAGACAAGGCAGCTGGAAGACCGGAGAGAAGGAGACTGGCACTTCAGAGGAGAGTAAGAAACTGGAGGAGAACAATCATAAAGCAGATGTCTAAGAGTGGAGAGAGCCGTCAAACGGAACGAAGAAGGTTTGAACCAGGAAAGAGGCCTTGTCACACTGAATGTGCAGTACTACACACTTCGATCATCTTATTCCAGACATCTGATTGGACGGCGACGCCTCCTTCTGGCTGCTCGTGCGCATACCGCATCGCAGAATGTTTCCAAAATATTTCCTACTCCAAACAAACAATttcct
>TCONS_00005261
CCCAACTCTGCTGCCTGATTTCACACTCTCGCCACTGGCTGCCCGTCTAAGCTCCAGACTCCACCTGCGCTCTGTAGAGCAACCCGTCTGATCTTTCAGCGCACTCAACTCTCAATACTATCTAACAACTTCAGACCTACATCTCTCTCTATTGAGACTGTCGCCGGACTGTATAAAGGAGAACCGGGGTTTTCTTTAAGGATGCATTCGGTTATCTGCCTTTTCGGTGCCTTCATAGCTGCCGCTGTGTTTGCTCCAGGGAGCTGCCTGCCGACGGTTATAGGTCTGTACGGTGAGACCATCGAAGTGCCATGCAACAATGGAAATAACAAGCCAGATGGCCTTATTTTCACCAAATGGAAATATGTGAAAGATGACGGCTCCCCTGGCGATCTACTAATAAAGCAGGCACAGAAAGATGATCCGACTGTGTCTGCCATGGACGGCTACAAAACTAGAGTTAGCATCGCTGCTAATTCCAGCTTACTGATTGCCCAGGGCTCTTTGACTGACCAGAGAGTCTTCACCTGCATGGTGGTGTCTTCAACTAATCTGGAGGAATTCTCTGTGGAAGTTAAAGTTCACAAAAAACCATCAGCCCCTGTAATCAAAAACAAAGTGAAAGAACTGGAAAATGGCAAACTGACGCAGttgGGGGAATGTGTGGTGGAGAGCGCCAACCCAGCAGCAGATCTCATCTGGATGAAGAACAACCAGGCTCTGGTGGATGATGGCAAGACGATCATTATCACATCAGATGTCACCAAGGACCCAGTCACCGGTCTGTCCAGCACCTCTTCCAGACTGCAGTACACAGCAAGGAAAGAGGATGTGGCATCACAGTTCACCTGCGTTGCAAAGCACGTGACGGGACCCAACCAGGTTTCAACACCCGATACCTTCCAAATTCGCTATCCCACTGAGAAGGTGAGTCTACAGGTTGTCTCTCAGAGCCCCATTAGGGAAGGTGATGATGTGACTCTGAAATGCCAGGCGGACGGAAACCCTCCTCCTACCAGCTTCAACTTTAACATTAAGGGAAAGAAGGTCACGGTGACGGACAAGGATGTCTACACACTGACCGGCGTCACCCGAGCCGACAGCGGTGTGTACAAGTGCTCTCTGCTTGACAACGATGTGATGGAGTCCACTCAGATCGTCACAGTGAGCTtTCTGGATGCAAGCCTCACTCCTACAGGCAAGGTGTTAAAAAAGCTCGGGGAAAACTTGGTAGTGTCTTTGGAGAAGAATGCCTCTTCTGAAGTAAAAGTGACGTGGACTAAGGATAACCGTAAACTGGACAAACTGCCTGATTTCTCCCAGTTGAGATACAGCGACGCGGGCTTATACGTGTGTGATGTGTCCATTGAAGGAATCAAACACAGCTTTTCCTTCGAGCTTACTGTGGAAGGTGGTCCAAGAATTACCGGCCTGACAAAGCATCGCAGCAATGACGGAAAACACAAAGTGTTGACGTGCGAGGCAGAAGGTTCACCTAAACCTGAAGTGCAGTGGAGTGTCAACGGAACCGACGATGAAACATCGTATGTCAACGGAAAAGCCACATACAAACTGACGGTGGTCCCGAGTAAGAACCTCACCGTCAGCTGCCTCGTGACCAATAAACTCGGTTTCGACACAAAGGACATCAGCGTGTTTTCCCGAAAAAATGAAGATGGCGCAGACCAGGCCAAAGTGATTGTGGGTGTCGTGGTTGGACTGTTTCTAGCCGCTGCCCTGGTGGGACTCATCTACTGGTTGTATATCAAGAAAACAAGACAAGGCAGCTGGAAGACCGGAGAGAAGGAGACTGGCACTTCAGAGGAGAGTAAGAAACTGGAGGAGAACAATCATAAAGCAGATGTCTAAGAGTGGAGAGAGCCGTCAAACGGAACGAAGAAG

Function

symbol description
alcama Enables identical protein binding activity. Involved in cartilage morphogenesis; positive regulation of cell morphogenesis involved in differentiation; and positive regulation of gene expression. Acts upstream of or within animal organ development and axonogenesis. Located in axon. Is expressed in several structures, including digestive system; immature eye; musculature system; nervous system; and pericardial region. Orthologous to human ALCAM (activated leukocyte cell adhesion molecule).

GO:

id name namespace
GO:0002250 adaptive immune response biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0002376 immune system process biological_process
GO:0010770 positive regulation of cell morphogenesis involved in differentiation biological_process
GO:0014033 neural crest cell differentiation biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0007409 axonogenesis biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0007155 cell adhesion biological_process
GO:0042995 cell projection cellular_component
GO:0030424 axon cellular_component
GO:0030425 dendrite cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042802 identical protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-30 Enables identical protein binding activity. Involved in cartilage morphogenesis; positive regulation of cell morphogenesis involved in differentiation; and positive regulation of gene expression. Acts upstream of or within animal organ development and axonogenesis. Located in axon. Is expressed in several structures, including digestive system; immature eye; musculature system; nervous system; and pericardial region. Orthologous to human ALCAM (activated leukocyte cell adhesion molecule).

Ensembl:

ensembl_id ENSDARG00000026531

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005259 False 3112 mRNA 0.45 15 28731749 28761454
TCONS_00005260 False 2058 mRNA 0.49 16 28733021 28835771
TCONS_00005261 True 1902 mRNA 0.50 14 28736876 28835812

Neighbor

gene id symbol gene type direction distance location
XLOC_002835 bbx coding downstream 206138 28470307 ~ 28525611 (-)
XLOC_002834 NA coding downstream 266723 28460213 ~ 28465026 (-)
XLOC_002833 CR392341.3 coding downstream 276578 28454500 ~ 28455171 (-)
XLOC_002832 CR392341.2 coding downstream 282881 28447906 ~ 28448868 (-)
XLOC_002831 CR392341.1 coding downstream 288009 28442740 ~ 28443740 (-)
XLOC_002837 BX537347.2 coding upstream 86323 28922135 ~ 28922251 (-)
XLOC_002838 BX537347.1 coding upstream 87705 28923517 ~ 28923633 (-)
XLOC_002839 si:ch211-103f14.3 coding upstream 251998 29087810 ~ 29101849 (-)
XLOC_002840 zpld1a coding upstream 276944 29112756 ~ 29120535 (-)
XLOC_002841 BX005332.1 coding upstream 292390 29128202 ~ 29138004 (-)
XLOC_002830 NA non-coding downstream 313570 28417651 ~ 28418179 (-)
XLOC_002843 NA non-coding upstream 430458 29266270 ~ 29491087 (-)
XLOC_002845 CU861448.1 non-coding upstream 872256 29708068 ~ 29708182 (-)

Expression


Co-expression Network