Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00005277 |
| length | 3308 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 16 |
| gene id | XLOC_002848 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 29751029 ~ 29768556 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0006904 | vesicle docking involved in exocytosis | biological_process |
| GO:0006914 | autophagy | biological_process |
| GO:0035542 | regulation of SNARE complex assembly | biological_process |
| GO:0048794 | swim bladder development | biological_process |
| GO:0003406 | retinal pigment epithelium development | biological_process |
| GO:0003407 | neural retina development | biological_process |
| GO:1902362 | melanocyte apoptotic process | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0007032 | endosome organization | biological_process |
| GO:0007033 | vacuole organization | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0010507 | negative regulation of autophagy | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0030318 | melanocyte differentiation | biological_process |
| GO:0060036 | notochord cell vacuolation | biological_process |
| GO:0005764 | lysosome | cellular_component |
| GO:0005765 | lysosomal membrane | cellular_component |
| GO:0005768 | endosome | cellular_component |
| GO:0005769 | early endosome | cellular_component |
| GO:0005776 | autophagosome | cellular_component |
| GO:0030136 | clathrin-coated vesicle | cellular_component |
| GO:0031902 | late endosome membrane | cellular_component |
| GO:0033263 | CORVET complex | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0030897 | HOPS complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0030674 | protein-macromolecule adaptor activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| id | description |
|---|---|
| ko04138 | Autophagy - yeast |
| ko05132 | Salmonella infection |
| ko04131 | Membrane trafficking |
| id | description |
|---|---|
| ZDB-GENE-050731-5 | Predicted to enable protein-macromolecule adaptor activity. Acts upstream of or within several processes, including animal organ development; melanocyte apoptotic process; and melanocyte differentiation. Predicted to be located in cytoplasmic vesicle and vacuole. Predicted to be part of HOPS complex. Predicted to be active in endosome. Is expressed in brain; heart; immature eye; and retina. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 12. Orthologous to human VPS11 (VPS11 core subunit of CORVET and HOPS complexes). |
| ensembl_id | ENSDART00000052787 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006075 | lncRNA | downstream | 259942 | 29266270 ~ 29491087 (-) | True | XLOC_002843 |
| TCONS_00005269 | lncRNA | downstream | 613025 | 29128202 ~ 29138004 (-) | True | XLOC_002841 |
| TCONS_00006074 | lncRNA | downstream | 1286003 | 28460213 ~ 28465026 (-) | True | XLOC_002834 |
| TCONS_00005770 | lncRNA | downstream | 1332850 | 28417651 ~ 28418179 (-) | True | XLOC_002830 |
| TCONS_00006073 | lncRNA | downstream | 1365460 | 28382085 ~ 28385569 (-) | True | XLOC_002828 |
| TCONS_00005294 | lncRNA | upstream | 1494296 | 31262852 ~ 31294777 (-) | False | XLOC_002858 |
| TCONS_00006076 | lncRNA | upstream | 1494296 | 31262852 ~ 31295006 (-) | True | XLOC_002858 |
| TCONS_00006077 | lncRNA | upstream | 2309255 | 32077811 ~ 32084121 (-) | False | XLOC_002862 |
| TCONS_00006078 | lncRNA | upstream | 2309255 | 32077811 ~ 32084624 (-) | True | XLOC_002862 |
| TCONS_00006079 | lncRNA | upstream | 2447857 | 32216413 ~ 32250771 (-) | False | XLOC_002863 |
| TCONS_00005275 | mRNA | downstream | 6108 | 29735900 ~ 29744921 (-) | False | XLOC_002847 |
| TCONS_00005274 | mRNA | downstream | 17835 | 29731060 ~ 29733194 (-) | True | XLOC_002846 |
| TCONS_00005272 | mRNA | downstream | 478272 | 29269998 ~ 29272757 (-) | False | XLOC_002844 |
| TCONS_00005271 | mRNA | downstream | 478272 | 29269998 ~ 29272757 (-) | True | XLOC_002844 |
| TCONS_00005270 | mRNA | downstream | 514169 | 29226180 ~ 29236860 (-) | True | XLOC_002842 |
| TCONS_00005278 | mRNA | upstream | 25261 | 29793817 ~ 29809105 (-) | True | XLOC_002849 |
| TCONS_00005279 | mRNA | upstream | 47088 | 29815644 ~ 29816467 (-) | True | XLOC_002850 |
| TCONS_00005280 | mRNA | upstream | 51616 | 29820172 ~ 29831944 (-) | False | XLOC_002851 |
| TCONS_00005281 | mRNA | upstream | 55674 | 29824230 ~ 29827000 (-) | False | XLOC_002851 |
| TCONS_00005282 | mRNA | upstream | 60957 | 29829513 ~ 29831944 (-) | True | XLOC_002851 |
| TCONS_00005276 | other | downstream | 11921 | 29736186 ~ 29739108 (-) | True | XLOC_002847 |
| TCONS_00005273 | other | downstream | 42847 | 29708068 ~ 29708182 (-) | True | XLOC_002845 |
| TCONS_00005263 | other | downstream | 827396 | 28923517 ~ 28923633 (-) | True | XLOC_002838 |
| TCONS_00005262 | other | downstream | 828778 | 28922135 ~ 28922251 (-) | True | XLOC_002837 |
| TCONS_00005252 | other | downstream | 1295858 | 28454500 ~ 28455171 (-) | True | XLOC_002833 |
| TCONS_00005286 | other | upstream | 762587 | 30531143 ~ 30531257 (-) | True | XLOC_002854 |
| TCONS_00005293 | other | upstream | 1252800 | 31021356 ~ 31104754 (-) | True | XLOC_002857 |
| TCONS_00005308 | other | upstream | 2773980 | 32542536 ~ 32610769 (-) | False | XLOC_002866 |
| TCONS_00005309 | other | upstream | 2799068 | 32567624 ~ 32610694 (-) | True | XLOC_002866 |
| TCONS_00005329 | other | upstream | 3608262 | 33376818 ~ 33376941 (-) | True | XLOC_002883 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000304_14296254_14303852.mRNA | True | 3129 | mRNA | 0.47 | 15 | CI01000304 | 14295795 ~ 14303882 (-) |
| bowfin (Amia calva) | AMCG00004360 | True | 3796 | mRNA | 0.55 | 16 | CM030121.1 | 44606289 ~ 44617399 (-) |
