XLOC_028525


Basic Information

Item Value
gene id XLOC_028525
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8904291 ~ 8905453 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058063
ATCTATTACATAGTAATTAATTACAAATCACCTTTGTGCTGTGCACAAAGACACATATTTTGctcttgtttttgaactgtggatGAAGAAAAGAGGCTGTTTGTTGAACTGATGAAATATCTGAAGTATTTGAATGTTGACTTGCTCAGATTGTTTCACCTCATAAATCAGCAGAATGACCATGTTGGAAGCCAAAAAATACTATCAGAGAAAGGCACGTGACTGTttgaagaaagaagaagaatgtATGACATGAAATcgacttatttacacacacacacaacgtgaTCTCAAAGTACTTTGCCCCTCAGATGGAGAGAGTGAATCAGACTGCTGCTGGAGCGAATTGTAAGCTTTATGAATTCAGATGTGTAAATGATGTACAAAtggtagtgttttttttattcttaagtTAATATTTACAGTAGAATGAGCCATTATGATGGGGAAGATGACAGTCTAACATGTACATGACTGCTCTGGAAGGCTCTGTTGAATAGTATGATTCCCGCAACGGTAAATGACCACAGTACAGAAGAATGAACAATTCAGCAGTGTGAAATCAACCCCAGAAGATGTGTATAAGAGAATGGAAACTATTGTTAAGACCtcactttattaataaatcattcaaatcCCATGTTGTGGTTGTTTTATTGTACTTTGTCATTTCTCTTTTATTAAAATGCATTGGCATATTAAGGAATAAAGT

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058063 True 712 lncRNA 0.35 2 8904291 8905453

Neighbor

gene id symbol gene type direction distance location
XLOC_028524 mpped1 coding downstream 1051 8849816 ~ 8903240 (-)
XLOC_028523 pnpla3 coding downstream 109041 8780179 ~ 8795250 (-)
XLOC_028522 ttll12 coding downstream 125102 8739093 ~ 8779189 (-)
XLOC_028521 BX842699.1 coding downstream 168700 8709082 ~ 8735591 (-)
XLOC_028520 BX649324.2 coding downstream 265662 8634704 ~ 8638629 (-)
XLOC_028526 scube1 coding upstream 1440 8906893 ~ 9008851 (-)
XLOC_028527 NA coding upstream 142853 9048306 ~ 9050945 (-)
XLOC_028528 si:dkey-48p11.3 coding upstream 146135 9051588 ~ 9054947 (-)
XLOC_028529 chst11 coding upstream 197729 9103182 ~ 9173552 (-)
XLOC_028530 hcfc2 coding upstream 279028 9184481 ~ 9196291 (-)
XLOC_028518 BX649324.1 non-coding downstream 316383 8587787 ~ 8587908 (-)
XLOC_028517 NA non-coding downstream 684300 8219461 ~ 8219991 (-)
XLOC_028516 NA non-coding downstream 689856 8213170 ~ 8214435 (-)
XLOC_028533 NA non-coding upstream 483365 9388818 ~ 9389648 (-)
XLOC_028534 NA non-coding upstream 609095 9514548 ~ 9521942 (-)
XLOC_028540 BX901962.1 non-coding upstream 743830 9649283 ~ 9651968 (-)
XLOC_028551 NA non-coding upstream 1441285 10346738 ~ 10348612 (-)

Expression


Co-expression Network