XLOC_028530 (hcfc2)


Basic Information

Item Value
gene id XLOC_028530
gene name hcfc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9184481 ~ 9196291 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055343
TTTTTTAGGCACGGGGAAGTGATTCGAACTGTTTGCATGCTGTACTCTTTTAATGCAATGCAATTGTGCATAAACAAACCTATATGTAATTAAACCCATAGCCCATTATGATTAAAAAGGGTCCCCTATGGAAAAGGGTTCGGTCCTACGCTGGACCTGTTCCGAGGGCGAGGCACGGGCACCGGGCCGTGGCCATAAGAGAGCTGCTGGTTGTGTTTGGTGGTGGAAACGAGGGAATTGCGACCGATCTGCATGTTTATAACTCAGTGACCAAGCAGTGGTTCCTGCCTGCAGTGAGAGGAGATATCCCACCTGGCTGTGCCGCTCATGGCTTTGTTTGTGAAGGCACACGGATATTGGTGTTTGGAGGGATGGTTGAGTTTGGCCAGTACACTAACAGTCTCTATGAACTGCAGGCCAGTCGATGGCTGTGGAAGAAACTAAAGCCCCGTCCACCAAAGAACGGATCGCTTCCATGCCCACGAATTGGCCACAGCTTCACTCTTCATGCTAATAAGTGTTACCTTTTTGGAGGAATGGCCAATGACAGTGAGGACCCGAATGGAAATATACCACGGTATCTGGACGACTTTTATGAGCTGGAGCTGCAGGCCCAATCCGGTGTTAAAGGCTGGAACGTTCCTGAAACTAAAGGTGGAGGCCCATCAGCAAGGGAGTCCCATAGTTCTGTGGTGTACTGTGGAAAGGGTGGCAGTTCACCGAGGCTTTACATCTTTGGGGGCATGTGTGGGGACAGACTGAATGATTTGTGGCAGTTAGACATTGagacTATGACATGGTCATTGCCTCCAACCAGAGGTCAATTGCCACTACCCAGGAGTTTGCACACCTCCAATGTCATTGGAAACAAGTTATATGTGTTCGGAGGCTGGGTTCCCATTGGAGAGGAAGAAGAGGCACTCGCTGCTGATGGAGTCAAGTGGATCTGCACCAACTCTCTTTCCATGCTAAACTTCGACACGCTAACATGGCATAACCTGACACCTGAAGAGCACCAGCAGGGATTGGTTGAACAGGATGAAAACAATGCAGACTGGCCAAGAGCACGCGCCGGGCATTGTGCGGTAACAGTCGGCTCTCGATTATGTATCTGGAGTGGCCGAGACGGATACAAAAAGTACAACAACTATCAGGTGTGCTGCAAAGATCTGTGGTACTTGGAAACTGAGCGGCCCGCCACCCCTGGAGCAGTTTTTCTTGTGAAGTCCACCATCAGCATGCTGCACGTCGCCTGGCGGCCCTTGCTTGCAGCTGAGTGTTACCTGCTTCAGTTACAGCCAATCACATCTCATCATTCCACTTCAGCTGAACCACAGACGGCACCGACTCCCCCACCAGAGCCAGGAGACAGAAGGGAATCTGTGCAGAAAGACGCCAAAAGTGCAGATGTCAAAATTAAAAGAGAGAAAGACTATTCATCACAGGAAAGCCCTTTGAGTcagaaagaaaaaggaaaggaTGGGGCAGACATCCAACCAACAGAGCGAGATATTTCTCCGGAGCCATCCAAGCAGCCTGAGACCACAAAGGATTGGTTTGACGTGGGTGTGTTTAAGACACTGTTCTGTGAGGTTACACACTACTTTCTGCCTTCTGAGAACGGCGACATGGCATCAGTGCTGTCTGCACAATACACATCATCTGACACAGAGTGGAAGTTGCCGGGTCCTCATAGTTTTACAGGTTGTGAGAAGCAGGAGTTGGACTCAGGAATCACATATAGGTTCAGGGTGGCCGGACTGAACAGCTGTGGTCTAGGAGACTTCAGTCCCATCAGTGAGTTCAAAACCTGCCAGCCTGGATTCCCTGGCGCACCATCTGCTGTCAAAATCACTAAGGGTACTGACTCTGTGCACATCTCCTGGGAGCCTCCGACCTCAGTGTCCGGGAAGATCATGGAGTATTCAATGTATTTGGCTGTGAGGAAGAGTCGAGGGAACAGCCTGGTGGAGCGTCCAGGTGAACTGGCCTTCATCCGAATCTACCGGGGGACCAAGACTTCATGCACAGTCACCGAAGCCCAGCTGAGCAATGCACACATCGACTGCTCTGCACGGCCTGCCATCGTCTTCAGAATCGCTGCCAAGAACGACCAGGGCTACGGTCCGGCTACTCAAATACGCTGGCTGCAAGATGCGAGTAAACTGAAGCCGTCAGTGATGCCGACAGACTCCAGTAGTTCAGCAGCAGAGCCTGACACCACCTGCAGATGAACTCACCCCTCATGCCAAACCTCCAGGACTCTCTGCTTTTATTCCATAAAgactttttgacattttaatttaacCACTTAGATGACTGGAAATAGATTCAGTCCATCATGTTTTTccttacttgttttttttacaatgtcgTGGTATTGTTTATACTGCAAGCATTAGCTTTTGAGTGAAGCTGATTGAGTGCCA
>TCONS_00055344
TGTCAAAATTAAAAGAGAGAAAGACTATTCATCACAGGAAAGCCCTTTGAGTcagaaagaaaaaggaaaggaTGGGGCAGACATCCAACCAACAGAGCGAGATATTTCTCCGGAGCCATCCAAGCAGCCTGAGACCACAAAGGATTGGTTTGACGTGGGTGTGTTTAAGACACTGTTCTGTGAGGTTACACACTACTTTCTGCCTTCTGAGAACGGCGACATGGCATCAGTGCTGTCTGCACAATACACATCATCTGACACAGAGTGGAAGTTGCCGGGTCCTCATAGTTTTACAGGTTGTGAGAAGCAGGAGTTGGACTCAGGAATCACATATAGGTTCAGGGTGGCCGGACTGAACAGCTGTGGTCTAGGAGACTTCAGTCCCATCAGTGAGTTCAAAACCTGCCAGCCTGGATTCCCTGGCGCACCATCTGCTGTCAAAATCACTAAGGGTACTGACTCTGTGCACATCTCCTGGGAGCCTCCGACCTCAGTGTCCGGGAAGATCATGGAGTATTCAATGTATTTGGCTGTGAGGAAGAGTCGAGGGAACAGCCTGGTGGAGCGTCCAGGTGAACTGGCCTTCATCCGAATCTACCGGGGGACCAAGACTTCATGCACAGTCACCGAAGCCCAGCTGAGCAATGCACACATCGACTGCTCTGCACGGCCTGCCATCGTCTTCAGAATCGCTGCCAAGAACGACCAGGGCTACGGTCCGGCTACTCAAATACGCTGGCTGCAAGGTGCGCAGGAGTTTCTAAAGCTTCATCAATCGCCATGTCTTTGATGTTTATGCATTTCCTGTTGAATCACCAAACAGCCATGCACACTCACCTCCAtgatattaggtacaccttgatAGCTGG
>TCONS_00055345
TCGCCTGGCGGCCCTTGCTTGCAGCTGAGTGTTACCTGCTTCAGTTACAGCCAATCACATCTCATCATTCCACTTCAGCTGAACCACAGACGGCACCGACTCCCCCACCAGAGCCAGGAGACAGAAGGGAATCTGTGCAGAAAGACGCCAAAAGTGCAGATGTCAAAATTAAAAGAGAGAAAGACTATTCATCACAGGAAAGCCCTTTGAGTcagaaagaaaaaggaaaggaTGGGGCAGACATCCAACCAACAGAGCGAGATATTTCTCCGGAGCCATCCAAGCAGCCTGAGACCACAAAGGATTGGTTTGACGTGGGTGTGTTTAAGACACTGTTCTGTGAGGTTACACACTACTTTCTGCCTTCTGAGAACGGCGACATGGCATCAGTGCTGTCTGCACAATACACATCATCTGACACAGAGGTTTGTCTACAGAGACCGCACATTTGTGAAATGCATTCTAGCAGTTTTACTTcacccttttttttttctgcacggCAGTGGAAGT

Function

symbol description
hcfc2 Predicted to enable transcription coactivator activity. Predicted to be involved in chromatin remodeling and regulation of transcription, DNA-templated. Predicted to be part of histone methyltransferase complex. Orthologous to human HCFC2 (host cell factor C2).

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0071339 MLL1 complex cellular_component
GO:0035097 histone methyltransferase complex cellular_component
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-203 Predicted to enable transcription coactivator activity. Predicted to be involved in chromatin remodeling and regulation of transcription, DNA-templated. Predicted to be part of histone methyltransferase complex. Orthologous to human HCFC2 (host cell factor C2).

Ensembl:

ensembl_id ENSDARG00000058127

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055343 False 2429 mRNA 0.50 14 9184481 9196291
TCONS_00055344 False 869 mRNA 0.50 6 9187046 9191220
TCONS_00055345 True 510 lncRNA 0.48 5 9189974 9192445

Neighbor

gene id symbol gene type direction distance location
XLOC_028529 chst11 coding downstream 10929 9103182 ~ 9173552 (-)
XLOC_028528 si:dkey-48p11.3 coding downstream 129534 9051588 ~ 9054947 (-)
XLOC_028527 NA coding downstream 133536 9048306 ~ 9050945 (-)
XLOC_028526 scube1 coding downstream 175630 8906893 ~ 9008851 (-)
XLOC_028525 NA coding downstream 279028 8904291 ~ 8905453 (-)
XLOC_028531 avpr1ab coding upstream 11431 9207722 ~ 9214288 (-)
XLOC_028532 C4H12orf66 coding upstream 142776 9339067 ~ 9350585 (-)
XLOC_028533 NA coding upstream 192527 9388818 ~ 9389648 (-)
XLOC_028534 NA coding upstream 318257 9514548 ~ 9521942 (-)
XLOC_028535 si:ch73-139j3.4 coding upstream 328514 9524805 ~ 9533345 (-)
XLOC_028521 BX842699.1 non-coding downstream 448890 8709082 ~ 8735591 (-)
XLOC_028520 BX649324.2 non-coding downstream 545852 8634704 ~ 8638629 (-)
XLOC_028518 BX649324.1 non-coding downstream 596573 8587787 ~ 8587908 (-)
XLOC_028540 BX901962.1 non-coding upstream 452992 9649283 ~ 9651968 (-)
XLOC_028551 NA non-coding upstream 1150447 10346738 ~ 10348612 (-)
XLOC_028553 BX897748.1 non-coding upstream 1465270 10661561 ~ 10661677 (-)

Expression


Co-expression Network