Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00055344 |
| length | 869 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 6 |
| gene id | XLOC_028530 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 9184481 ~ 9196291 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006338 | chromatin remodeling | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0071339 | MLL1 complex | cellular_component |
| GO:0035097 | histone methyltransferase complex | cellular_component |
| GO:0003713 | transcription coactivator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050417-203 | Predicted to enable transcription coactivator activity. Predicted to be involved in chromatin remodeling and regulation of transcription, DNA-templated. Predicted to be part of histone methyltransferase complex. Orthologous to human HCFC2 (host cell factor C2). |
| ensembl_id | ENSDART00000156919 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00058066 | lncRNA | downstream | 136101 | 9048306 ~ 9050945 (-) | True | XLOC_028527 |
| TCONS_00058065 | lncRNA | downstream | 178268 | 8975117 ~ 9008778 (-) | False | XLOC_028526 |
| TCONS_00055340 | lncRNA | downstream | 178268 | 8975118 ~ 9008778 (-) | True | XLOC_028526 |
| TCONS_00058064 | lncRNA | downstream | 178322 | 8907729 ~ 9008724 (-) | False | XLOC_028526 |
| TCONS_00058063 | lncRNA | downstream | 281593 | 8904291 ~ 8905453 (-) | True | XLOC_028525 |
| TCONS_00058067 | lncRNA | upstream | 197598 | 9388818 ~ 9389648 (-) | True | XLOC_028533 |
| TCONS_00058068 | lncRNA | upstream | 323328 | 9514548 ~ 9521942 (-) | True | XLOC_028534 |
| TCONS_00055357 | lncRNA | upstream | 413146 | 9604366 ~ 9607454 (-) | False | XLOC_028539 |
| TCONS_00055359 | lncRNA | upstream | 458063 | 9649283 ~ 9651968 (-) | True | XLOC_028540 |
| TCONS_00055371 | lncRNA | upstream | 577851 | 9769071 ~ 9773130 (-) | False | XLOC_028544 |
| TCONS_00055342 | mRNA | downstream | 13494 | 9103182 ~ 9173552 (-) | True | XLOC_028529 |
| TCONS_00055341 | mRNA | downstream | 132099 | 9051588 ~ 9054947 (-) | True | XLOC_028528 |
| TCONS_00055338 | mRNA | downstream | 178195 | 8906893 ~ 9008851 (-) | False | XLOC_028526 |
| TCONS_00055339 | mRNA | downstream | 178200 | 8907147 ~ 9008846 (-) | False | XLOC_028526 |
| TCONS_00055337 | mRNA | downstream | 284640 | 8898760 ~ 8902406 (-) | True | XLOC_028524 |
| TCONS_00055346 | mRNA | upstream | 16502 | 9207722 ~ 9214288 (-) | True | XLOC_028531 |
| TCONS_00055347 | mRNA | upstream | 147847 | 9339067 ~ 9350585 (-) | True | XLOC_028532 |
| TCONS_00055348 | mRNA | upstream | 333585 | 9524805 ~ 9533345 (-) | True | XLOC_028535 |
| TCONS_00055349 | mRNA | upstream | 352239 | 9543459 ~ 9549693 (-) | True | XLOC_028536 |
| TCONS_00055350 | mRNA | upstream | 364060 | 9555280 ~ 9586713 (-) | False | XLOC_028537 |
| TCONS_00055328 | other | downstream | 599138 | 8587787 ~ 8587908 (-) | True | XLOC_028518 |
| TCONS_00055327 | other | downstream | 1045580 | 8141349 ~ 8141466 (-) | True | XLOC_028515 |
| TCONS_00055310 | other | downstream | 1311102 | 7870665 ~ 7875944 (-) | False | XLOC_028507 |
| TCONS_00055389 | other | upstream | 1470341 | 10661561 ~ 10661677 (-) | True | XLOC_028553 |
| TCONS_00055432 | other | upstream | 2415538 | 11606758 ~ 11606855 (-) | True | XLOC_028574 |
| TCONS_00055433 | other | upstream | 2416976 | 11608196 ~ 11608283 (-) | True | XLOC_028575 |
| TCONS_00055457 | other | upstream | 3083894 | 12275114 ~ 12286066 (-) | True | XLOC_028592 |
| TCONS_00055464 | other | upstream | 3222199 | 12413419 ~ 12433016 (-) | True | XLOC_028596 |
