XLOC_028531 (avpr1ab)


Basic Information

Item Value
gene id XLOC_028531
gene name avpr1ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9207722 ~ 9214288 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055346
TGCATAAAGATTGCAATGACATATTGCAGTAAATTTTCAAATGTTACAAATAATTTACAATACATCATTTTATGatgattaattatgattaattattatgttataataaaGTGACGATTTTTTGTCTTGTATGTCTATATCCCTGTCAGTGTATAAGGGTTTTATGAACGTTAGTAAAAAGTTTAAAATCTCTAAACTGAATTTTTATGCTAATTCAGAATATATGTTACTTTCTCAAAAGAAAAGTTATTGATTTTTTCGTATTAtggatttttattaataatataaaattattgatTATTTCGGGGGTCACTACATGTTATTTGGATACTTTCATGTGTAGGGAAACTGGGATTTAAATCCTTAGAAGgtcattaaatccttattttaatGGTTAAAACAATCGATTATTTCATATAAAGGTAATCATATAACAAATGGCCGTATCTGCATTTTACTTCATGCATTTTTGCGCAAAAATAGTTCCAATAAGAGCGCGCGCCGCTTGTACCTACATCCACTTGTAATGTTATTTATCAGACTGATTATGGGCGTGCAGAAGGGGAGAGGGAAGGGGCGGCTCTTGAGCTTTCCAGCCTCTTCAGTGGGGGTTGGATTTAAGGAATGCTTGTCAACACTTGTCAGACAATCTTTCTGACCTTTGTGCGTCAGATCACAACCGAGACACACTTATGTGTACGATCCGAATACAGCTCGTGTCTCTGAAACAATAATGCATCAATCCTGTCCATTCTAACTGAGGACTCTTCAACGGCTGCCTTTTACGCACGAGATTCCGTGCGCAATGATGCCCGGCGCAGCGCGCGCATCTCCGCATACCTGACCGCGCGCTCGCGCCTTTACGCATGAAAACCACTGCTCGTTTCCAAACCCAACCATGGGCAACACGTCGAACCAAATCACGGCGAACAACACTACCGATCCGTTCGGGAGGAACGAAGATGTGGCCAAAATGGAGATCACGGTCCTGAGCGTCACTTTCCTCGTGGCGGTTGTCGGAAATCTGTGCGTTTTGCTGGCCATGCACAACACCAAGAAGAAGAGCTCGCGCATGCACCTGTTCATCAAGCACCTGAGCCTCGCGGACCTGGTGGTGGCTTTCTTCCAGGTTCTCCCACAGCTCTGCTGGGAGATCACTTACAGGTTTTACGGACCTGACTTTCTTTGCCGGATAGTCAAGCATCTCCAGGTCTTGGGAATGTTCGCGTCCACTTACATGATGGTGATGATGACTCTGGACCGCTACATCGCTATATGCCACCCTCTTAAAACCCTCCAGCAGCCCACTCGGCGCGCGTACATCATGATCTGCTCCACTTGGCTCTGCAGCCTGTTGCTCAGCACTCCTCAGTACTTCATCTTCTCCCTGAGCGAGATCCAGAACGGCTCGGATGTGTATGACTGCTGGGGACACTTCATCGAGCCGTGGGGCATCCGAGCCTACATCACCTGGATCACCGTGGGCATCTTCCTCATCCCGGTGGTCATCCTCATGATCTGCTACGGGTTCATCTGCCACAGCATCTGGAAGAACTTCAAGTGCAAGACGAAGCGAGGCGCCGCGCACAACCCCAAGAGCGGGATGATCGGAAAGGCGTCCGTCAGCAGCGTCACCATCATCTCCAGAGCCAAACTGCGCACGGTCAAGATGACCTTCGTGATTGTTTTGGCGTACATTGTGTGCTGGGCTCCGTTCTTCACCGTGCAAATGTGGTCAGTCTGGGATGAAAACTTCTCCTGGGATGATTCAGAAAATGCAGCGGTGACCCTCTCTGCCCTGCTGGCGAGCCTCAACAGCTGCTGTAACCCGTGGATCTACATGCTGTTCAGTGGCCACCTTCTCCACGACTTCTTAGGCTGTTTCCCATGCTGGAACAAACCCCAAAACACCCTGCACAAAGAGGACTCGGACAGCAGCATCAGGAGGAACACACTCCTGTCCAAGCTGACCTCTGTCCGCGCCAAAGATGGCTTTGACTCCTGGAAAGACCCATGCAACTCCCGAAAGTCCAGTCAGTCGATAGGCCTAGACTATTCCCGCAAATCCAGTCAGTGTTTGCATTTTGACTGTTCGCGCAAATCAAGTCAGAGCGTGCCTATGGAGTCCTAGAAGCCATGTtggatgaataataaaaaaagacagtCAATAAAtgtatagagttgaagtcaaaagcatttaccctcctgtgaatttttgaaatcttttttttttttttacatatttgccaaattatgtttaacagggcaagacatttttcacagtattgtcttattttgtcttattttttacagtaagtcttattttggtttatttcagctgtaataaaatctatttttaattttctattaaaatatgatattattatattatacaatattattagcccccttaatcaatattttgtttttgtctacaaaacaaatcgtcattatacaatgacttgcctaattaatgtAACTggcttagttaagcctttaaatgcagacccgtagccagcctggtgaatgggtcggttcttttttctcaaaaagtggacttgTTTCAGTTatacacctcattttctatttaattatgagatttaaatgcattttagagacattttaagcactatttttagctttTTGATGtgccaaaaatattttataaagatttagaaaaaataaatatgaaaaatacttacttttaaaatactaatttattacatcatatatcatctgaaaaaataggaatctgtaaaagcataggtctcaaactcaattcctggagcgcCACAACTCTGCAGTTTTgcaccaaccctaatcaaacacagctgatccaaataatcaaggtgttcaagactactaaagACTATTGAGCAGGTGTGAGTtgaaggtggttggagctaaactgtgcagagccgcggccctccaggaattgaggttGAGAGCCCTGTGCTAAAGTTTTAAACTAAAAACTGtagtctattgtcatttattaggcaaataacaaactggccagcacatttaatTTTTCTTAGTCAGGATTTggctatttgaataataaaaaatatatatataaatcaaacatAATAACTTAGAGCTTCacgatttttctagcctctcttgtaataAAGTACATTTGGAAATtgatggataacaacaatagccaaaatagtatttgAGTGAATCTTAATATGGGTCATTATTTGCTTCAAGTGAATGTCCCAGATTTTACTTGTGAAATTtgttctctatttaaaaacaatacagtagctaAAGAAGACTTCACTTacatcagattgtatgttttcttgcacagttggatgttggactcatgaaaaataattgtttgcattggaaAAAACTGATAAGCTCAAATTGCAccgaagcgacagccaacagaggatttcGCTTTGTCTCAAAACCCTTTTTCGATGgttatttttgctatttatgatggcatagcagtcaaaattgtacaaataagatcatgtatgggacaaattctggacattTGTCAATTACGGACGTGGGTATTttgaaccacccaaaccccctcTGGCtatgctgaatactagtgtcttgaaaaagatctagtcaaatattatttactgtcatcatggcaaagataaaataaatcagttattagacatgagttattaaaactattatgttcataaAAGTGTTGTGCAgaaaatcttttctctgttaaacagaaatcgagaaataaaataaacaggggggctaataattgagacttcaactgtatattgggGCTCGACTTACTAAACAAAGCAAATTAATGTGCGACGGCAGAGGAAATTGTTTCTACTGCAGAGACAGATGGACAATGGTTTTTTTGTTACTGAAATAAATGTGTTGATTCTTATATGTTACAGTATACATGTCGTGTTGAACCTTCCTTTATGACTAAAGTCTGTGACTTATTTGTTTACAACAATAATGTGATGCTCTTGAAACAAagactatagtaatttatagtaaatactatagtgtttttgaaccatattgtacactctcagaaataaaggtacgggaGCTGtctctggggcagtaccttttcaaaaggtacatatttgtacctgaagggtccattatggtaccttaaaggtacttttaagttacattttggtacaaatatgcaccttttaggtacaaCTGTGgattatttgggtaaaatatgtatcttttaaaaaggtactgccccattGACAgctcctttatttctgagattaTAGTAGAGTGTATTATACTGTAGCATTTACCCTTTGTTAACGAATGCTATACTGTAGTAAACtgtaacaaatactgtagtacttTAGTTTTTAGTACagtacactgtacaaaatgctgggttctacacaaatcgatttgtgttgggacaacatgaagcaattaggttaacttattcattcttcttcggcttagtctctgattcaTCAGAGGTCgatacagcggaatgaaccgccaactattccagcatatgttttatacagcggatgccctttcagttgcaacccagaaCTTGgaaacggccaatttagttcatccagtttaCCTCtagtgcttgtctttggactgtgggggaaaccagagcacccaaactctaaacagaaataccaactggcccagctgggactcgaactagcgatcttcttgctgtgaggtgacagtggtaaccactgagccaccatgccgccccaatTAACTTATagaaacaaatttaaaacaaatacaagtGGAATGAACAtcattatttgagtgtaaatgtatataattgtaatataatagACTCTAAacttgtagaaaactacagtattgggtcatttgtttatattactatatttgCTGAGTAAAGAGTTACCAGAACACGTTAATTCAAGTACTTTGCCATAGTATGGCTCAAAAACACTGTAGCATTTACTGTATATTAGTATAGTATTAAGTCATGTTTTTTTATATCGTTTGGGAGTAAAAAAGTGtaacgtgagtgtgtgtgtgtcagtgttttaAAGTTGCTTGCAACAAACTTTGAGCAAAATATCCAAATCAGCTTGTCTGGTGTTTGTAATTTGTAAgagaaattgtattttttgttgtctCAAAGACTtgtaaatacatacaaatattgcaaataaacatCGCAAACCATC

Function

symbol description
avpr1ab Enables peptide hormone binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; positive regulation of vasoconstriction; and regulation of systemic arterial blood pressure by vasopressin. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in blood vessel endothelium; central nervous system; and head. Human ortholog(s) of this gene implicated in autism spectrum disorder; bipolar disorder; hypertension; and mood disorder. Orthologous to several human genes including AVPR1A (arginine vasopressin receptor 1A).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001992 regulation of systemic arterial blood pressure by vasopressin biological_process
GO:0045907 positive regulation of vasoconstriction biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0042277 peptide binding molecular_function
GO:0005000 vasopressin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-105 Enables peptide hormone binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; positive regulation of vasoconstriction; and regulation of systemic arterial blood pressure by vasopressin. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in blood vessel endothelium; central nervous system; and head. Human ortholog(s) of this gene implicated in autism spectrum disorder; bipolar disorder; hypertension; and mood disorder. Orthologous to several human genes including AVPR1A (arginine vasopressin receptor 1A).

Ensembl:

ensembl_id ENSDARG00000045788

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055346 True 5174 mRNA 0.39 2 9207722 9214288

Neighbor

gene id symbol gene type direction distance location
XLOC_028530 hcfc2 coding downstream 11431 9184481 ~ 9196291 (-)
XLOC_028529 chst11 coding downstream 34170 9103182 ~ 9173552 (-)
XLOC_028528 si:dkey-48p11.3 coding downstream 152775 9051588 ~ 9054947 (-)
XLOC_028527 NA coding downstream 156777 9048306 ~ 9050945 (-)
XLOC_028526 scube1 coding downstream 198871 8906893 ~ 9008851 (-)
XLOC_028532 C4H12orf66 coding upstream 124779 9339067 ~ 9350585 (-)
XLOC_028533 NA coding upstream 174530 9388818 ~ 9389648 (-)
XLOC_028534 NA coding upstream 300260 9514548 ~ 9521942 (-)
XLOC_028535 si:ch73-139j3.4 coding upstream 310517 9524805 ~ 9533345 (-)
XLOC_028536 tymp coding upstream 329171 9543459 ~ 9549693 (-)
XLOC_028525 NA non-coding downstream 302269 8904291 ~ 8905453 (-)
XLOC_028521 BX842699.1 non-coding downstream 472131 8709082 ~ 8735591 (-)
XLOC_028520 BX649324.2 non-coding downstream 569093 8634704 ~ 8638629 (-)
XLOC_028518 BX649324.1 non-coding downstream 619814 8587787 ~ 8587908 (-)
XLOC_028540 BX901962.1 non-coding upstream 434995 9649283 ~ 9651968 (-)
XLOC_028551 NA non-coding upstream 1132450 10346738 ~ 10348612 (-)
XLOC_028553 BX897748.1 non-coding upstream 1447273 10661561 ~ 10661677 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_01046248_01048613 AVPR1AB, AVPR1A coding CI01000066 null 1046221 ~ 1049364 (-)