LOC118937679


Basic Information

Item Value
gene id LOC118937679
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 49849505 ~ 49852210 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035002.1
gagagggagggacagagagagggagagagggagggacagagagagagggaggggtgttgTTTAGATTCCCTGTCTGTTAAGTTCACTGTGGACAGGGTGCAAACACTAAGAGGAAAGAAcaaactgtcctctctctctctccctcttctgccCAGAGCGGCAGCAGTGACAAACGCTCTCTCCATTACACAACACATGCACGTCATTATTTGTCCTGAAAGCTTCTTCCTTTGACCCGCCCGTGCTTCAAAACTCTGAAGGAGCTGAGGCGGGCCGTCGGAAACACTGAAGAAGGGGAGGGAAGTGAGACAGAGCACTGGTCTGCGGGGCGGGTGTTGGATTGGAACCATACTTCCCAGTGTGGAAGCAGTCAGTCGACGGTCGGAGAAGCGCTAGTAAGGAAGCAGTCGGTCTGATTATGAGTCAGCATTCTAGTTATATGAGCCGCGGCTGAAGCGTTACAAAAACGGCTTGCGAAGGCTTTTAACACGGAAACAAAAAGGGTTTCTAGTACAGTATTCTACATTATTGTTGGTgcataaaaataaacaaacatgagTAAACGGCAGTCAAACTACTACAGCCTTGAACCAGTTCCCTAAGGGATAAAGCAACTAACACAGAAGAGGAGATCCTTTTCAATGACGTCGCCGTTGTGTTCTGTTAGTGTGCTGACGGCTTTGTCACGCTacagacaacagcagcagcagcagctgggTGGTACGGGGACAGCACGAGGACATTCATCCACAGCAAACGCCAAAGCAGCATTTCTCAACCCAATTCCAGGGGGACTGAATGCacgttttgttccagcccagcactaacgcAACCTATTCAACTGATCATCAATTTGATTAGCAGAATAATGGGCGTTAAGTGTAGGGCTGGAATAAAACATGCAAATCAGGTGGGTCGTCGGGAATGGGGCAAAGAAACCCTGCTTGGGGAGGATAATAATAATACCATCCATCCATACTCTGTAGGATAATACCATCCATCCATACTCTGTAGGATGATACCATCCATCCATACTCTGTAGGATGATACCATCCATCCATACTCTGTAGGATAATACCATCCATCCATACTCTGTAGGATAATACCATCCATCCATACTCTGTAGGATAATACCATCCATCCATACTCTGTAGGATAATACCATCCATCCATACTCTGTAGGATAATACCATCCATCCATACTCTGTAGGATAATACCATCCATCCATACTCTGTAGGATAATACCATCCATCCATACTCTGTAGGATAATACCATCCATCCATACGTCTGCATGAAAAGTGCTGTCACCTGCTGCCTGCTGGACCGAAATTCCTCACCACCTCACTAGAACTCCAGCCTACTGTTTCTGAAAAGAAGCGGAGGAAGAGGGCGTAGACGCCCCtctccaataataataataataacaacctgTTTTCTACTACGTTGGGGGCCGTATATGAAGGGTCCCATCTAAAACACAGCCTAGTCTAAATCTGTGTATATATTGAATATTGAAACCAAGTTTACATTTCATTGTCTTAGCAACACGTAAACGGTTAGGTGGTGGGGTGGATTCTGTGGGTTTTGCTACAGTGCTAACCCCACTCACCCACCCCGACGACCTATCTGCAGACAACGATGAGCATTGTTGTTCTTATGGTATTATGATGTGATTGTAGAATAAGAAATGAATAGAATGTGCTACTCATTCTGTTTCTATGGTTGTAATGGTCTGCCTCCAAGGGTTACGGTGGATGGAAAGGAAGGAGCCAGACTGGCTgtagacagacagtgtcacctgACCAATACGCTGCTTTAGGAAGTTTCATCCTGAATCCTTGTGTCCCCTCTGGGACAGGAAAACAAACATACAAAACGAGTCATCTTCTATATTACGACCCTGTTATACCAGCGCTGGGGGTTGTCAGCGGGCTCAGCCATCAGCTGCCCATCCACACACGGTTCAGCAGCATTCAACTCTCTCCAGGTTggggggacggggacggggacgtAGGCCACTCCATCCAGAGTAGGTCAGTGGCACAGAGGGCCAGTAAGTAACACACCTGTGGGAGCAGGGAATGGGAGAGTCCAAGGTGGaatagtggtggtgggtgtcaggacgccccccccccccccccttaaaaaAGGCCGAGTCACACCATGCCAGCGCAGGCCTGAGCAATGCACAACTCCCAAGTGAGGctgcgtcacaaatggcaccttatGCACTaagcagggaatagggtgccatttttggGACGCAGACTGAGTAAGTGCATGGTGCCCTGTCTGTTATACACACTGTTCTTTGGCATTATCAACTCAGGAGACAGCCAGGTGGGTAGTAGTAGTGTACTGACTGAGACATGAGAAAAGCTCTCAGCACAGTAGTAGTCAGAGTTTAAACAGTGAGCATTGCCAAAGGAACCTTTTCTATACATACCCATCATATGTAGAAAAGGCTGTATATGGTATTATATATTTACGGATTAACTTtgatttcaatacattttcaacccTTCTTCGTCGccttcaaaaacattttttttatttttattttttatttttttttaaaccctgAGAAAATACTGTGGACCGCTTTTAGTACAAAATACAACTCTCTGAGacggaaaaaaaaacaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035002.1 True 2650 mRNA 0.46 2 49849505 49852210

Neighbor

gene id symbol gene type direction distance location
LOC110537724 LOC106567531 coding upstream 15886 49819682 ~ 49833619 (+)
ccdc83 ccdc83 coding upstream 149412 49690623 ~ 49700822 (+)
tmem126a tmem126a coding upstream 174528 49673087 ~ 49674977 (+)
LOC110537713 LOC106567542 coding upstream 551196 49262142 ~ 49300347 (+)
LOC110537712 LOC106567543 coding upstream 643957 49167549 ~ 49209751 (+)
LOC110537726 c2ail coding downstream 148467 50000677 ~ 50001670 (+)
LOC110537728 LOC106567527 coding downstream 170641 50022851 ~ 50043177 (+)
LOC110537730 skp1 coding downstream 193133 50045343 ~ 50051707 (+)
LOC110537731 LOC106567523 coding downstream 283937 50136147 ~ 50153616 (+)
LOC110537732 kct2 coding downstream 301972 50154182 ~ 50185842 (+)
G1082352 NA non-coding upstream 10206 49837033 ~ 49839299 (+)
G1082358 NA non-coding upstream 43528 49805389 ~ 49805977 (+)
G1082347 NA non-coding upstream 51072 49798189 ~ 49798433 (+)
G1082339 NA non-coding upstream 59180 49789962 ~ 49790325 (+)
G1082328 NA non-coding upstream 77335 49771369 ~ 49772170 (+)
G1082389 NA non-coding downstream 20914 49873124 ~ 49874331 (+)
G1082425 jade2 non-coding downstream 59227 49911437 ~ 49913157 (+)
G1082515 NA non-coding downstream 193264 50045474 ~ 50045685 (+)
G1082523 NA non-coding downstream 211691 50063901 ~ 50064117 (+)
G1082524 NA non-coding downstream 212431 50064641 ~ 50064863 (+)
G1082266 NA other upstream 168701 49679023 ~ 49680804 (+)
G1081353 NA other upstream 1102006 48746955 ~ 48747499 (+)
G1077322 NA other upstream 3840896 46004151 ~ 46008609 (+)
nrgna NA other upstream 3929244 45900621 ~ 45920265 (+)
G1086237 LOC106567502 other downstream 2797394 52649604 ~ 52657495 (+)
G1087914 NA other downstream 4257480 54109690 ~ 54148962 (+)
LOC110538908 LOC106603872 other downstream 4422096 54253719 ~ 54283905 (+)
G1091217 NA other downstream 6873397 56725607 ~ 56726003 (+)
G1091235 NA other downstream 6900208 56752418 ~ 56752947 (+)

Expression


Co-expression Network