LOC110538908 (LOC106603872)


Basic Information

Item Value
gene id LOC110538908
gene name LOC106603872
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 54253719 ~ 54283905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939510.1
TCGTAACATAGAATGTTAAAGAAGAAGACGCAATGGGCACGTTCGTAGATTCGCtctggccatctactccgatCACTCCCGTCTGAGTCTGCAACGAGCAGAATAACTGattaatttacgaacgcacccaacGTAAGAGACTTCCTATTGCATAGCATGTTGGTACTTGTGTACACTGCTAAATAATGTAGCTAGGTTTTAGAGCCACCAGCAGTTATTTTGTGTAATTTCTTGAAATTATTTCGATACTGCTACACTTCTATATGTACAAAACTAATTGACGGGCTGAATTTCAACAAACACCGGTATGGCGGAGGGTGTCGGTAACGCAGTGAATCTTCCCCCCGGAGATCCGCAGCTCATCGGGCTCATCGTGGAACATCTCAAGAACCGAGGCCTGTTCGACGAGTTCCGCAGAGACTGCCTGGCAGATGTGGATACAAAGCCTGCCTACCAGAATCTACGACAGAAAGTTGACAACTTCGTCTCTACTCATTTGAACACTCAAGACTGGAACCCATCAATCAACAAAAATCAAGTGCGGAATGTGCTAAGACAAAGCGTCGTGCAGTCCGGCATGCTGGAGTCCGGAGTGGACAGAATCATCACCCAGGTGGTGGATCCCAAGCTTAACCACACCTTCAGGCCCCACATTGAGGAAGCCATTCACGACTTCCTGTCTGctgagaagaaggaggagggtcCATCCAACACTCCATCAGAGACAGAACAGCAAGAGGCTCCAAGCCACACTGGACCCAAAACACCATTGAATttagtacatttaaaaaatatatatatatttaaaatgttattttctttTTGGAGTGTATTAGTGCGAATGGAGATGCTACTTACATTTTCTTTGGCGGTCTTTCTTTGTATAGCCTTTCAGCAAGTAAAGGCGACAGACCCAAACGAACTTCACGAAACCCCTCAAGAGAAACAATTGAACCATCAGAAAAGACGACTCTCACTGCAAAACACAGCGGAGATCCAGCACTGTCTGGTGAATGCTGGGGATGTGGGCTGTGGCATGTTCGAATGCTTCAACAACAACTCCTGTGAAATACGAGGCCTACATGAGATCTGCGTAACATTTCTGCACAATGCCGGCAAGTTTGACTCCAAGGGGAAGTCCTTCATCAAGGATGCCCTGAAGTGCATGGCCCACAGCCTGAGGCACCGGTTCAGCTGTGTGAGCAGGAAGTGCCTGGCAGTGAAGGAGATGATGATCCACCTGCAGAGAGAGTGCTACGTCAAACACAACCTTTGTTCCGCCATCCAGGAGAACATCAATGTCATGGTGGAGATGATCCACTTCCAGGACCTCTTCCCCAAAGGGACTCATGTGGAGCTGGTGAACATCCTGCTGGGTTGTGGTGAGGAGGTGAGGACAGCCATAGCACAGAGAGTGAGGATGCAGTGTGAGCAGAACTGGGGGGCCCTGTGTGACAGCCTGAGCCCGTGCTCCCTCGGTCGTTCAGATGACCCCCAACACATCACCGTCCCTCCCGCCTCTCTGCATCCTGCTGGACAGCTCTTCCTCCCAGACATTGAACAGGAGAAACCTAAGACGGGCCAGCTAGACAGGGGCTACCTCCACCCCTCTGTGAGTCTCAGTCAGGAGCCCCTGGACAATGCCACAGACCTTGGGCTCGCTGTGGCCAGTCAACCACCCAATACCGCCATCCAGGGGTGAAACGCTGAGTGCAATGTCTTTAGCCTGTTGACACACAACATAGCTGCCCCTAACCCCTTTTCCCCCTCAAACAGCCCTACTACTGAACCTCAGTGGTTACAAACAATGA
>TU1237656
AAGAGACTTCCTATTGCATAGCATGTTGGTACTTGTGTACACTGCTAAATAATGTAGCTAGGTTTTAGAGCCACCAGCAGTTATTTTGTGTAATTTCTTGAAATTATTTCGATACTGCTACACTTCTATATGTACAAAACTAATTGACGGGCTGAATTTCAACAAACACCGGTATGGCGGAGGGTtatttagtcagccaccaattctgcaagttctcccacttttaaaaagatgagaggcctgtaattttcatcacttcaactatgacagacaaaatgaggaaaacattttttttatgaatttatttgcaaattatggtggaaaatttagtatttggtcaataacaaaagtatctcaatactttgttatataccctttggcAATGAccaaggtcaaacgttttctgtaagtcttcacaaggttttcacactgttgctggtattttggcccattcctccatgcagatctgctttagagcagtaatgttttggggctgttgctgggcaacacggactttcaactccctccaaatattttctatggggttgagatctggagactggctaggccactccaggaccttgaaatgcttcttatgaagccactttgttgcccgggtggtgtttgggatcattgtcatgctgaaagacccagccacgtttcatcttcaatgcccttgctgatggtaggctttgttactttggtcccagctctctgcaggtcattcactaggtccccctgtgtggttctgggattttttgctcaccgtttgcatggagccccagatcgagggagattgtcagtggtcttgtatgtcttccatttcctaattgctcccacagttgatttcttcaaaccaagatgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtgactatttGAGTTTGTGGACAGgcgtcttttatactgataacaagttcaaacaggggccattaatacaggtaatgagtagaggacagaggagcctcttaaagaacaggtctgtgagagccagaaatcttgtttgtaggtgaccaaatacttattttccaccataaattcattaaatcatacaatgtgatttttctggatttttttttctcattttgtctgtcatggttgaagtgtacctatgataaattacaggcctcatctttaagtgggagaatttgcacaattggtggctgactaaatacttttttgccccactgtatatacaatttACAGTTTTAACATTTTATATAGGTTCAGTGAAGATGTACTTGTCATAGCAAGGACTCTTGCAGAAGGTTGGATGTTTTCCATTTCTTAATTGTGGCTGTAATGTAGTTTTAACTGGACACTAACTTGGTACACACAATGTATTGAGACCGTGAGCTATTGCTTTTGAGATACTATGATGTCTCTTAAAAGTACATCTCGTCCTAATGTACTTAAACACCCACATTTTGGATGGCTGACTCCAGGTCATAGATTTCAAGGTATCCAGAAGATGAGGTAAATATAATAAGTAAACTGTCCCTTTGATACTACGCTTTACATTCTATAAAATAGGTAATACTGCGTTAGCTCGACCCATTTATACTGTCACTACTGAAAAACATTTGTATAGAGATTGGTGCTTTTGCAAGTTCAACATTTCTGTGGAAAAAAAATTCTACTTTTTTCATTTGTATGTCTAAGACAGGTTTACCTTCCCTTTCAACTCAGTAATTGCACATCAATTCCACAAGGGAAGTCCATCTCTGGTATATGATCACTAATTATAAGGAACAAGTGGCCTACCACAATCAGGAAAGTTCGTAACAAATCTCACAATGGTAACAACTCTGCAACATGGTATGTATATTCACTCAAAGACAAACCTCAGGTCTCGTAACAAAACGAGACCCATAATTTCCTGGTTAAAATATTATGGGCCTTGGACTATTCTCAGAGGTCTTTGATAATACGTATGTATCAAATAGGGTCTACTGCAATGTATTTTTCAACTACAGTGTCTTATCAGAACATTTGCCACTGACGGTTCAACATTTTTACTAGCTTTTGATGCAAATGGCTAGCTACTGTACATCAAATGCTTGTTCTAACTTCATCATTAGTACTCCAAGGAACCTACCTCACACCATGCCAGCTCTAGATGTTTCATACTGGACACATTGAGGACATTGAACTGGTATGAATACAACTCCGCTATCTCACACATTCATTTTTACATGCATTTTGTACAGGTTGGTTTATATGATAGTACTGACAACTTCTGTGTCAGTATTATCACCTAATTGTAATCAAATGAATGACATTCACTTTTACCTATTGGAAAATGAAGGTCTGTACTTAAAGATTTCTTATGAAGTTTGTTTGTACTCTGattcaatgttttttatttttaataggcTATGCATACCATTAGGCCTTGATGCAAGCAA
>TU1237658
GCCTGACATGCGATTGGTCGGCAGCCACAAACGACAGCACCTGTTTAGCGCCTTCATTAAAACTGACATAAGAGTTGAGGGAAATATAGGCAGCATCCATTCCCCCGCAATGCTCGTTTTGATTCACGTCTCTACTGGAAAGTTATCCATTTAGTTGAATttagtacatttaaaaaatatatatatatttaaaatgttattttctttTTGGAGTGTATTAGTGCGAATGGAGATGCTACTTACATTTTCTTTGGCGGTCTTTCTTTGTATAGCCTTTCAGCAAGTAAAGGCGACAGACCCAAACGAACTTCACGAAACCCCTCAAGAGAAACAATTGAACCATCAGAAAAGACGACTCTCACTGCAAAACACAGCGGAGATCCAGCACTGTCTGGTGAATGCTGGGGATGTGGGCTGTGGCATGTTCGAATGCTTCAACAACAACTCCTGTGAAATACGAGGCCTACATGAGATCTGCGTAACATTTCTGCACAATGCCGGCAAGTTTGACTCCAAGGGGAAGTCCTTCATCAAGGATGCCCTGAAGTGCATGGCCCACAGCCTGAGGCACCGGTTCAGCTGTGTGAGCAGGAAGTGCCTGGCAGTGAAGGAGATGATGATCCACCTGCAGAGAGAGTGCTACGTCAAACACAACCTTTGTTCCGCCATCCAGGAGAACATCAATGTCATGGTGGAGATGATCCACTTCCAGGACCTCTTCCCCAAAGGGACTCATGTGGAGCTGGTGAACATCCTGCTGGGTTGTGGTGAGGAGGTGAGGACAGCCATAGCACAGAGAGTGAGGATGCAGTGTGAGCAGAACTGGGGGGCCCTGTGTGACAGCCTGAGCCCGTGCTCCCTCGGTCGTTCAGATGACCCCCAACACATCACCGTCCCTCCCGCCTCTCTGCATCCTGCTGGACAGCTCTTCCTCCCAGACATTGAACAGGAGAAACCTAA

Function

NR:

description
uncharacterized protein LOC110538908

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939510.1 False 1811 mRNA 0.50 7 54253719 54280957
TU1237656 False 2507 lncRNA 0.38 4 54253853 54283905
TU1237658 True 960 TUCP 0.49 4 54274306 54280721

Neighbor

gene id symbol gene type direction distance location
LOC100301661 LOC106567454 coding upstream 448811 53801662 ~ 53804908 (+)
LOC110537776 LOC106567605 coding upstream 561089 53690304 ~ 53692630 (+)
LOC110537774 NA coding upstream 572588 53662525 ~ 53681131 (+)
LOC110537771 LOC106567489 coding upstream 833874 53330181 ~ 53419845 (+)
LOC110537768 LOC106567493 coding upstream 1120794 53004829 ~ 53132925 (+)
ppp2r2bb LOC106567445 coding downstream 78316 54359273 ~ 54460602 (+)
LOC110537791 LOC106567438 coding downstream 598716 54879673 ~ 54888634 (+)
LOC100136153 LOC100136153 coding downstream 766203 55047160 ~ 55052488 (+)
LOC110537795 ablim3 coding downstream 784164 55065121 ~ 55209632 (+)
LOC110537794 afap1l1 coding downstream 928773 55209730 ~ 55247859 (+)
G1087985 NA non-coding upstream 14386 54239100 ~ 54239333 (+)
G1087967 NA non-coding upstream 51158 54202310 ~ 54202561 (+)
G1087961 NA non-coding upstream 58810 54194641 ~ 54194909 (+)
G1087960 NA non-coding upstream 59412 54194102 ~ 54194307 (+)
G1087954 NA non-coding upstream 67252 54186181 ~ 54186467 (+)
G1088015 pcyox1l non-coding downstream 21343 54302300 ~ 54341841 (+)
G1088014 NA non-coding downstream 26838 54307795 ~ 54310437 (+)
G1088016 pcyox1l non-coding downstream 61265 54342222 ~ 54343510 (+)
G1088143 NA non-coding downstream 221196 54502153 ~ 54502437 (+)
G1088152 NA non-coding downstream 236344 54517301 ~ 54542634 (+)
G1087914 NA other upstream 104757 54109690 ~ 54148962 (+)
G1086237 LOC106567502 other upstream 1596224 52649604 ~ 52657495 (+)
G1082266 NA other upstream 4572915 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 4953372 49262142 ~ 49300347 (+)
G1081353 NA other upstream 5506220 48746955 ~ 48747499 (+)
G1091217 NA other downstream 2444650 56725607 ~ 56726003 (+)
G1091235 NA other downstream 2471461 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 2834868 57112902 ~ 57118165 (+)
LOC110537841 mtmr4 other downstream 3618514 57893341 ~ 58071571 (+)
LOC118937686 NA other downstream 3935198 58216142 ~ 58222215 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location