RNA id: TU1237656


Basic Information

Item Value
RNA id TU1237656
length 2507
lncRNA type sense_over
GC content 0.38
exon number 4
gene id LOC110538908
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 54253719 ~ 54283905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAGACTTCCTATTGCATAGCATGTTGGTACTTGTGTACACTGCTAAATAATGTAGCTAGGTTTTAGAGCCACCAGCAGTTATTTTGTGTAATTTCTTGAAATTATTTCGATACTGCTACACTTCTATATGTACAAAACTAATTGACGGGCTGAATTTCAACAAACACCGGTATGGCGGAGGGTtatttagtcagccaccaattctgcaagttctcccacttttaaaaagatgagaggcctgtaattttcatcacttcaactatgacagacaaaatgaggaaaacattttttttatgaatttatttgcaaattatggtggaaaatttagtatttggtcaataacaaaagtatctcaatactttgttatataccctttggcAATGAccaaggtcaaacgttttctgtaagtcttcacaaggttttcacactgttgctggtattttggcccattcctccatgcagatctgctttagagcagtaatgttttggggctgttgctgggcaacacggactttcaactccctccaaatattttctatggggttgagatctggagactggctaggccactccaggaccttgaaatgcttcttatgaagccactttgttgcccgggtggtgtttgggatcattgtcatgctgaaagacccagccacgtttcatcttcaatgcccttgctgatggtaggctttgttactttggtcccagctctctgcaggtcattcactaggtccccctgtgtggttctgggattttttgctcaccgtttgcatggagccccagatcgagggagattgtcagtggtcttgtatgtcttccatttcctaattgctcccacagttgatttcttcaaaccaagatgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtgactatttGAGTTTGTGGACAGgcgtcttttatactgataacaagttcaaacaggggccattaatacaggtaatgagtagaggacagaggagcctcttaaagaacaggtctgtgagagccagaaatcttgtttgtaggtgaccaaatacttattttccaccataaattcattaaatcatacaatgtgatttttctggatttttttttctcattttgtctgtcatggttgaagtgtacctatgataaattacaggcctcatctttaagtgggagaatttgcacaattggtggctgactaaatacttttttgccccactgtatatacaatttACAGTTTTAACATTTTATATAGGTTCAGTGAAGATGTACTTGTCATAGCAAGGACTCTTGCAGAAGGTTGGATGTTTTCCATTTCTTAATTGTGGCTGTAATGTAGTTTTAACTGGACACTAACTTGGTACACACAATGTATTGAGACCGTGAGCTATTGCTTTTGAGATACTATGATGTCTCTTAAAAGTACATCTCGTCCTAATGTACTTAAACACCCACATTTTGGATGGCTGACTCCAGGTCATAGATTTCAAGGTATCCAGAAGATGAGGTAAATATAATAAGTAAACTGTCCCTTTGATACTACGCTTTACATTCTATAAAATAGGTAATACTGCGTTAGCTCGACCCATTTATACTGTCACTACTGAAAAACATTTGTATAGAGATTGGTGCTTTTGCAAGTTCAACATTTCTGTGGAAAAAAAATTCTACTTTTTTCATTTGTATGTCTAAGACAGGTTTACCTTCCCTTTCAACTCAGTAATTGCACATCAATTCCACAAGGGAAGTCCATCTCTGGTATATGATCACTAATTATAAGGAACAAGTGGCCTACCACAATCAGGAAAGTTCGTAACAAATCTCACAATGGTAACAACTCTGCAACATGGTATGTATATTCACTCAAAGACAAACCTCAGGTCTCGTAACAAAACGAGACCCATAATTTCCTGGTTAAAATATTATGGGCCTTGGACTATTCTCAGAGGTCTTTGATAATACGTATGTATCAAATAGGGTCTACTGCAATGTATTTTTCAACTACAGTGTCTTATCAGAACATTTGCCACTGACGGTTCAACATTTTTACTAGCTTTTGATGCAAATGGCTAGCTACTGTACATCAAATGCTTGTTCTAACTTCATCATTAGTACTCCAAGGAACCTACCTCACACCATGCCAGCTCTAGATGTTTCATACTGGACACATTGAGGACATTGAACTGGTATGAATACAACTCCGCTATCTCACACATTCATTTTTACATGCATTTTGTACAGGTTGGTTTATATGATAGTACTGACAACTTCTGTGTCAGTATTATCACCTAATTGTAATCAAATGAATGACATTCACTTTTACCTATTGGAAAATGAAGGTCTGTACTTAAAGATTTCTTATGAAGTTTGTTTGTACTCTGattcaatgttttttatttttaataggcTATGCATACCATTAGGCCTTGATGCAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1237679 lncRNA upstream 14520 54239100 ~ 54239333 (+) True G1087985
TU1237661 lncRNA upstream 51292 54202310 ~ 54202561 (+) True G1087967
TU1237654 lncRNA upstream 58944 54194641 ~ 54194909 (+) True G1087961
TU1237653 lncRNA upstream 59546 54194102 ~ 54194307 (+) True G1087960
TU1237647 lncRNA upstream 67386 54186181 ~ 54186467 (+) True G1087954
TU1237709 lncRNA downstream 18395 54302300 ~ 54341841 (+) True G1088015
TU1237708 lncRNA downstream 23890 54307795 ~ 54310437 (+) True G1088014
TU1237710 lncRNA downstream 58317 54342222 ~ 54343510 (+) True G1088016
TU1237842 lncRNA downstream 218248 54502153 ~ 54502437 (+) True G1088143
TU1237858 lncRNA downstream 233396 54517301 ~ 54542634 (+) True G1088152
XM_021624157.2 mRNA upstream 448945 53801662 ~ 53804908 (+) True LOC100301661
XM_021624154.2 mRNA upstream 561223 53690304 ~ 53692630 (+) True LOC110537776
XM_021624152.2 mRNA upstream 572722 53662526 ~ 53681131 (+) False LOC110537774
XM_036937799.1 mRNA downstream 75368 54359273 ~ 54460602 (+) False ppp2r2bb
XM_036937801.1 mRNA downstream 120885 54404790 ~ 54460602 (+) False ppp2r2bb
XM_036937802.1 mRNA downstream 155981 54439886 ~ 54460602 (+) True ppp2r2bb
XM_021624177.2 mRNA downstream 595768 54879673 ~ 54888634 (+) False LOC110537791
XR_005035008.1 mRNA downstream 595768 54879673 ~ 54888634 (+) False LOC110537791
TU1237606 other upstream 104891 54109690 ~ 54148962 (+) True G1087914
TU1235839 other upstream 1596358 52649604 ~ 52657495 (+) True G1086237
TU1231639 other upstream 4573049 49679023 ~ 49680804 (+) True G1082266
TU1231371 other upstream 4953506 49291405 ~ 49300347 (+) True LOC110537713
TU1231375 other upstream 4962584 49277152 ~ 49291269 (+) False LOC110537713
TU1241153 other downstream 2441702 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 2468513 56752418 ~ 56752947 (+) True G1091235
TU1241421 other downstream 2831920 57115825 ~ 57117927 (+) True LOC110537831
TU1241907 other downstream 3615566 57899471 ~ 57914832 (+) True LOC110537841
TU1241903 other downstream 3932250 58216155 ~ 58222190 (+) False LOC118937686

Expression Profile