RNA id: XM_021624157.2


Basic Information

Item Value
RNA id XM_021624157.2
length 3247
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC100301661
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 53801662 ~ 53804908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTACAAGTGAGAGACTTCACTTCAGACACGTCATTGCTGGATGATGAGACTAAAACGGAATCGGGATCTCTTCACAATAACTTCAAAATAAGAATAAAGTAACAAAACAAAAGAGGCACGACATCCAGTGCGTAACGTTTAGGAAAACTCGTAAACTACTCTTATTGTTGTTGATTTAGAGCTTGTGAGAAGATAAACGAGTTGAATTGATTCTATCGGACGGTATTTGCACCTTCTCTGGATGTGGTCGCACGGTTTTTCACGTGAAAGTAGAGTGAATTTCGAAAGGACTTCATTTAATGTTAATTACACAATGCTGGCGGTACTGGGGCTGCATCCGGAACACACgcgaagagaggaggagagcagagaggcgTGCGCTTCTGGTGTATAGATGGGGGGAAGGAGAATAAGTAGAGCCTACTATTTCCATGTAAATAATGGCTTACCATTGAGCTTTCTTTGAGGATTTAACGgcatctgcaaaaaaaaaaacgtttgttTGAAAAAAGTTGACAGCTCATCATCCATGGAGGTTCATTGCAATTTTGGAGACTTGATGTGTGACAAAAACGGACCGCACAAACGGATTGAGCTCCGGGATTACGGTTATGTGTTGCTCCACAGTAAAATGTAGCCTGACATGTTTTATTGGTGCTTATGGAAACTTGAATGCACATTTTTCATAAAACAAAGGCAGAAGCCACGTTTCATGTGTAAAGACACAgacaatgtatttattttgttgtTATGATGCGAATGCATTTCTATTCAACAATGTTTTGGGAGGAGTCGTGATTATGTCTACATTTCTATCACAGTCCAAATCGTCATGCGGTAGGTCCAGTGCATGTGCATTGCAGTTACAAAGTCTAATGCTTGTCCTGGATGGAGTGTCAATAGGAGCACGAATATAATCAGATGGACACGCCTTGTCAGTCATTAAACAAATCAGATAAATGCAGTGCAAATATGATCAATAGATTGTATTGATGAGCCCATATATAAGGCAAATGATTGGCCCAGCCTCTGTTTACATAACATGCCTGCGAGAATATGGTGTGAACGTTTCAGATGACTGCTGACAGCTCATTGAAATAGACATAACATCAAATAAAAAATCAAGTTTAGATTGGTAGCATACATCATATTCAACTCTTCAATAACGGCTGGAATACCTTTTGTTGAAAACTGCTGCTCTAACATTAGAATGTCTTCGAGAATTCATGAACAGGATGATTTTTTTGGCTAATTTCTAACGATTGCTTTTTGAAATATTTATAGACACTATTCTGCAAGATGATCGTTGTGATGAGCATGGTGACccaacctccaaatgagcttgtCCCCAGGCAAGAGGCCAAGGCTACATTTTCCATCTAATTGTCCTGACTTCAGGTGATTGGAATTATGGGGTGATTTCCATCTCTACAAGCTGACAGAAACATGGATTTGAACTTCTCAATGGTCCGTGATATCGATAATTTGCCAGAGAGAAACTCATCCAAGCGTGTTCTGACAGGCTGTTTTCTCTTTGCGCTCATCCTGACCACTCTGCTAGGGAACACACTGGTATGTGTTGCCGTCACCAAGTTCCGCCACCTGCGCTCAAAGGTCACCAACTTCTTTGTGATCTCTTTGGCCATCTCAGACCTGCTGGTGGCCATCTTGGTGATGCCATGGAAGGCAGCGACGGAGATCGTGGGCTTCTGGCCCTTCGGAGCCTTCTGCAACATCTGGGTGGCATTCGACATCATGTGCTCCACAGCGTCCATTTTGAACTTATGTGTCATCAGCGTGGACAGATATTGGGCAATCTCAAGCCCGTTCCGCTATGAGAGGAAGATGACACCCAAGGTGGCATTTATTATGATCAGTGTGGCATGGACTCTGTCCGTGCTTATCTCCTTCATCCCTGTGCAGTTGAACTGGCACAAGGCTGCAGTGTTGGAGCTCAACAGCACTTACGGGGAGCTGCCTCCGGACAATTGCGACTCCAGCCTTAACAGGACTTAtgccatctcctcctccctcatcagcTTCTACATCCCTGTGGCAATCATGATCGTGACTTACACCCGGATTTACAGAATTGCCCAGATACAAATCAGGAGAATCTCAGCCCTGGAGAGGGCTGCGGAGAGTGCCAAGAACCGCCACAGCAGTATGGGGAACAACTCCAACATGGAGACGGAGAGCTCCTTCAAGATGTCTTTCAAAAGAGAAACCAAAGTCCTAAAGACCCTCTCTGTCATAATGGGGGTGTTTGTATGCTGCTGGCTGCCCTTCTTTATCCTCAACTGCATGGTGCCCTTCTGTGAGGCCAACAGCCCCTCTGATTTCTTCTGCATTAGCCCTGCTACATTTGACGTGTTCGTCTGGTTCGGCTGGGCCAACTCCTCACTCAACCCCATCATATATGCCTTCAACGCGGACTTCCGCAAAGCATTCTCCATCCTGCTGGGCTGCCACAGACTCTGCCCGGGCAGCAATGCCATAGAGATAGTGAGCATCAACAACAATGGAGCTCAGCCACCTGCGTCCCAGTATCAGCCTAAAGGGCACATTCCCAAGGAGAGAAACAATGCCACCTATGTGATTCCCCACAGCATCCTGTGTCAGGAGGAGGAGCTGCAGAAGAAGAATGAGGTTGGGATTAAGACCTTGGAGAAACTGTCCCCGCCTCTTTCTGAAAACTTGGACAGCGATGCAGATGTGATTAATCCTATAACTCAGAACGGCCAACACAAAACTGTGAGATGTTGATTGGTGTATGTATTGGTATACAAAAATAGAAGGAACCCACAGAGGGAGAGACCAGGCAGAATGCCTAGCAAAAGTGTGGGGTATACAAACTGAGCTTCACTGCAAACCTTAAATCTCTAATCACTATAGAAATCTACAGAATGTTTCAAAATGAAGGCACTTTATCCTGGTTAACTATCTGCAAAACACCTTCAGCATTTATTAATGAAGTATAGACAGATTTGTTGATAAATGTTCCATAACTTgaataaagaaaaaataaatacacacatgTATACGTGTGTTGTATTTACAAATACGTATACATTTGCATATATGTACAGTAGTGATGTTACAAATATCCTGGATGCCATTATAACATGGAGAAAGAAGTAGAAATATTAGCTAAATGTCTTGTAAGTGCTTTACATTTATGTATACAGTGTGTTTCATATTCTCCGTTGAACTATAAAGATAATTGGTTTTGCTAAAAAACATTAT

Function

GO: NA

KEGG:

id description
K04144 DRD1; dopamine receptor D1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1237314 lncRNA upstream 8135 53793264 ~ 53793527 (+) True G1087637
TU1237183 lncRNA upstream 50055 53740504 ~ 53751607 (+) True G1087514
TU1237178 lncRNA upstream 71276 53729574 ~ 53730386 (+) True G1087512
TU1237112 lncRNA upstream 178542 53622389 ~ 53623120 (+) True G1087459
TU1237111 lncRNA upstream 179539 53621834 ~ 53622123 (+) True G1087458
TU1237326 lncRNA downstream 2491 53807399 ~ 53809011 (+) True G1087649
TU1237329 lncRNA downstream 5291 53810199 ~ 53810423 (+) True G1087652
TU1237342 lncRNA downstream 21091 53825999 ~ 53826202 (+) True G1087665
TU1237358 lncRNA downstream 23505 53828413 ~ 53828613 (+) True G1087681
TU1237400 lncRNA downstream 54726 53859634 ~ 53859836 (+) True G1087721
XM_021624154.2 mRNA upstream 109032 53690304 ~ 53692630 (+) True LOC110537776
XM_036937786.1 mRNA upstream 120531 53662525 ~ 53681131 (+) False LOC110537774
XM_036939510.1 mRNA downstream 448811 54253719 ~ 54280957 (+) False LOC110538908
XM_036937799.1 mRNA downstream 554365 54359273 ~ 54460602 (+) False ppp2r2bb
XM_036937801.1 mRNA downstream 599882 54404790 ~ 54460602 (+) False ppp2r2bb
XM_036937802.1 mRNA downstream 634978 54439886 ~ 54460602 (+) True ppp2r2bb
XM_021624177.2 mRNA downstream 1074765 54879673 ~ 54888634 (+) False LOC110537791
TU1235839 other upstream 1144167 52649604 ~ 52657495 (+) True G1086237
TU1231639 other upstream 4120858 49679023 ~ 49680804 (+) True G1082266
TU1231371 other upstream 4501315 49291405 ~ 49300347 (+) True LOC110537713
TU1231373 other upstream 4510393 49277103 ~ 49291269 (+) False LOC110537713
TU1237606 other downstream 304782 54109690 ~ 54148962 (+) True G1087914
TU1237658 other downstream 469398 54274306 ~ 54280721 (+) True LOC110538908
TU1241153 other downstream 2920699 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 2947510 56752418 ~ 56752947 (+) True G1091235
TU1241421 other downstream 3310917 57115825 ~ 57117927 (+) True LOC110537831

Expression Profile