RNA id: TU1241171



Basic Information


Item Value
RNA id TU1241171
length 530
RNA type TUCP
GC content 0.43
exon number 1
gene id G1091235
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 56752418 ~ 56752947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacacgccacctgggagacacaccagacatgtggaagaaggtgttctggccagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatgcccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagtcaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatcaacaatggaatggttcaaaaataaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1241167 lncRNA upstream 5922 56746260 ~ 56746496 (+) True G1091231
TU1241160 lncRNA upstream 17430 56734734 ~ 56734988 (+) True G1091224
TU1241109 lncRNA upstream 33187 56702746 ~ 56719231 (+) True zzef1
TU1241018 lncRNA upstream 93664 56658234 ~ 56658754 (+) True G1091106
TU1240936 lncRNA upstream 178079 56572554 ~ 56574339 (+) False LOC110537822
TU1241173 lncRNA downstream 2821 56755768 ~ 56756068 (+) True G1091237
TU1241148 lncRNA downstream 36375 56789322 ~ 56827110 (+) True G1091212
TU1241282 lncRNA downstream 282801 57035748 ~ 57039445 (+) True G1091330
TU1241401 lncRNA downstream 337103 57090050 ~ 57090274 (+) True G1091440
TU1241404 lncRNA downstream 341617 57094564 ~ 57094782 (+) True G1091443
XM_021624238.2 mRNA upstream 38136 56663069 ~ 56714282 (+) False zzef1
XM_021624239.2 mRNA upstream 38136 56663069 ~ 56714282 (+) False zzef1
XM_021624240.2 mRNA upstream 38136 56663069 ~ 56714282 (+) False zzef1
XM_036937852.1 mRNA upstream 94867 56615568 ~ 56657551 (+) True LOC110538909
XR_005035030.1 mRNA upstream 97917 56615568 ~ 56654501 (+) False LOC110538909
XM_036937854.1 mRNA downstream 39669 56792616 ~ 56869110 (+) False LOC110537826
XM_036937855.1 mRNA downstream 39989 56792936 ~ 56869110 (+) True LOC110537826
XM_036937857.1 mRNA downstream 160076 56913023 ~ 57015547 (+) False camkk1a
XM_036937856.1 mRNA downstream 160076 56913023 ~ 57033702 (+) False camkk1a
XM_036937858.1 mRNA downstream 160076 56913023 ~ 57033702 (+) True camkk1a
TU1241153 other upstream 26415 56725607 ~ 56726003 (+) True G1091217
TU1237658 other upstream 2471697 54274306 ~ 54280721 (+) True LOC110538908
TU1237606 other upstream 2603456 54109690 ~ 54148962 (+) True G1087914
TU1235839 other upstream 4094923 52649604 ~ 52657495 (+) True G1086237
TU1231639 other upstream 7071614 49679023 ~ 49680804 (+) True G1082266
TU1241421 other downstream 362878 57115825 ~ 57117927 (+) True LOC110537831
TU1241907 other downstream 1146524 57899471 ~ 57914832 (+) True LOC110537841
TU1241903 other downstream 1463208 58216155 ~ 58222190 (+) False LOC118937686
TU1244093 other downstream 2788611 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 3278056 60031003 ~ 60034020 (+) True G1094218

Expression Profile