RNA id: TU1231639


Basic Information

Item Value
RNA id TU1231639
length 1782
RNA type TUCP
GC content 0.49
exon number 1
gene id G1082266
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 49679023 ~ 49680804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCCAGTCAAAATAGTGTAACATTTAGTTATCAATGTCAAgcaacatacactgctcaaaaaaataaagggaacacttaaacaatgtaacgccaagtcaatcacacttctgtgaaatcaaactgtccacttaggaagcaacactgattgacaataaatttcacatgctgttgtgcaaatggaatagacaacaggtggacatTATAGGCagttagcaagacacccccaataaaggagtggttctgcaggtggggaccacagaccgaccacttctcagttcctatgcttcctggctgatgttttggtcacttttgaatgctggcgatgctttcactctagtggtagcatgagacggagtctacaacccacacaagtggctcaggtagtgcagctcatccaggatggcacatcaatgcgagctgtggcaaaaaggtttgctgtgtctgtcagcgtagtgtccagagcatggaggcgctaccaggagacaggccagtacatcaggagatgtggaggaggccgtaggagggcaacaaccctcctacgctacctccgcctttgtgcaaggaggaacaggaggagcactgccagagccctgcaaaatgacctccagcaagccacaaatgtgcatgtgtctgctcaaactgttagaaacagactccatgagggtggtatgagggcccgacgtccacaggtgggggttgtgcttacagcccaacaccatgcaggacgtttggcatttgccagagaacaccaagattggcaaattcgccactggcgccccgtgctcttcacagatgaaagcaggttcacactgagcacgtgatagacgtgacagagtctggagacgccgtggagaatattctgctgcctgcaacatcctccagcatgaccggtttggcggtgggtcagtcatggtgtggggtagcatttctttggggggccgcacagccctccatgtgctcgccagaggtagcctgactgccattaggtaccgagatgagatcctcagaccccttgtgagaccatatgctggtgcggttggccctgggttcctcctaatgcaagacaatgctagacctcatgtggctggagtgtgtcagcagttcctgcaagaggaaggcattgatgctatggactggcccgcccgttccccagacctgaatccaattgagcacatctgggatatAATGTCTCGCTCCagccaccaacgccacgttgcaccacagactgtacaggagttggcggatgctttagtccaggtctgggaggagatccctcaggagaccatccgccacctcatcaggagcatgcccaggcgttgtagggaggtcatacaggcacgtggaggccacacacactactgagcctcattttgacttgttttaaggacatgccATGCCATCCAGCTCAGCAGTTCCTTACATTATTTGTTGAACATTCAGACCTTGTGGTCTGTCAAAAAGAGTCAATGGCCTACACTACTAGGTGTGTAAATCCTACTATATGCCACAACTCCAAATAAAAAATGGGAAAGATATCCAAAATGACTTGATTTTATAATTTTGAACAGCACATGTATCTATCTAGATTTGTGCTTCAGGCATATAGCTAGACATTAACTTAGTAAGACTAATTTTGAGATCCGAGAACACCCGAAGCCAATTTAAGAGAGTGAACTACTACATTATACCTAAATGCAGCAGCATTATGTCAAAAACAAGTACACCAGACGAATAAGTGTATGCATATACAATATGAGCTCTCCGCTCAAATGAAGCCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1231627 lncRNA upstream 51062 49620932 ~ 49627961 (+) True G1082254
TU1231623 lncRNA upstream 60497 49618081 ~ 49618526 (+) True G1082251
TU1231622 lncRNA upstream 60988 49617826 ~ 49618035 (+) True G1082250
TU1231621 lncRNA upstream 61967 49616551 ~ 49617056 (+) True G1082249
TU1231620 lncRNA upstream 63375 49615367 ~ 49615648 (+) True G1082248
TU1231663 lncRNA downstream 18832 49699636 ~ 49700822 (+) True ccdc83
TU1231668 lncRNA downstream 24450 49705254 ~ 49708379 (+) True G1082293
TU1231664 lncRNA downstream 29258 49710062 ~ 49713831 (+) True G1082291
TU1231700 lncRNA downstream 76629 49757433 ~ 49758346 (+) True G1082323
TU1231706 lncRNA downstream 90565 49771369 ~ 49772170 (+) True G1082328
XM_021624019.2 mRNA upstream 4046 49673087 ~ 49674977 (+) True tmem126a
XM_021623994.2 mRNA upstream 380714 49262142 ~ 49298309 (+) False LOC110537713
XM_021623993.2 mRNA upstream 380714 49277012 ~ 49298309 (+) False LOC110537713
XM_036937680.1 mRNA upstream 473475 49167549 ~ 49205548 (+) False LOC110537712
XM_036937682.1 mRNA upstream 473475 49167552 ~ 49205548 (+) False LOC110537712
XM_021624052.2 mRNA downstream 9819 49690623 ~ 49700093 (+) False ccdc83
XM_021624051.2 mRNA downstream 9821 49690625 ~ 49700093 (+) False ccdc83
XM_021624058.2 mRNA downstream 138878 49819682 ~ 49833619 (+) True LOC110537724
XR_005035002.1 mRNA downstream 168701 49849505 ~ 49852210 (+) True LOC118937679
XM_021624061.2 mRNA downstream 319873 50000677 ~ 50001670 (+) True LOC110537726
TU1231371 other upstream 378676 49291405 ~ 49300347 (+) True LOC110537713
TU1231372 other upstream 387754 49262320 ~ 49291269 (+) False LOC110537713
TU1231373 other upstream 387754 49277103 ~ 49291269 (+) False LOC110537713
TU1231375 other upstream 387754 49277152 ~ 49291269 (+) False LOC110537713
TU1231374 other upstream 387772 49262320 ~ 49291251 (+) False LOC110537713
TU1235839 other downstream 2968800 52649604 ~ 52657495 (+) True G1086237
TU1237606 other downstream 4428886 54109690 ~ 54148962 (+) True G1087914
TU1237658 other downstream 4593502 54274306 ~ 54280721 (+) True LOC110538908
TU1241153 other downstream 7044803 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 7071614 56752418 ~ 56752947 (+) True G1091235

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU407371 True 843 TUCP 0.57 1 NW_019172826.1 2728308 ~ 2729150 (-)