RNA id: XM_021624154.2


Basic Information

Item Value
RNA id XM_021624154.2
length 2037
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110537776
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 53690304 ~ 53692630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCAGTGGGACATGCCTAATAGGCCCAAACGTTTTGTTTCATGGGCCATTTAATTGCGTTCACTTCCAAGCGCGCATCACGCTTGCGCACAGTACCTAGGCCATTCCCATGATTTGTAACTTGTAAGTTGAGTAAAGGGgcaggtggggggagagagagagagagacaaaccgGGAGGTTCTGCCAATTGAAATAGCTCAGTAACAGCAGCGAGCCAGAGAACCGAGCCTGCCTCTATGTCAGGGCCACTTACCTGCAAGGTGCGCAACGAAGATGATGACCATGAACGGCAAGCAGCATTTCTCTATGCACCCGGTGCTGCAGGAGCCCAAATACTCTGGCCTGCACGCGAGTTCGGAAGGCATGCGCAGGGTGTGTCTGCCTGCCCCGCAGCTTCAGGGCAATATATTCGGTTGCTTTGATGAGAGTCCACTGGCACGCGCGGAAGCTCTGGCGGCTGCTGACATTGTCTCTCACGGCAAGAGTCACCCTTTCAAGCCTGACGTGACTTACCATACCATGAGTAGTGTCCCCTGCACCCCCAACTCCTCTACGGTGCCCATCACCCACTCCACCACCCTGacccctcaccaccaccaccaccacctcaaccagaGTTTGGAGGGGGATCTTCTGGATCACATCTCGTCCAGTCTCTCTGTGAGCGGGATGGGGGCTCCGGATTCCTCTATGATGGCCACTCAAGCCCACCAGCACCACCTCCAGACCATGGGTCACCTTCACCAAGCTATGGGCATTGGTCATCCGCACTCATTGTCTGTGCACAACGGAATGTCGTGTGTCAACGACGTGGAGTCGGATCCTAGAGAGCTGGAAGCCTTCGCTGAGCGGTTCAAACAACGGAGGATAAAGCTCGGGGTGACCCAGGCGGACGTTGGCTCAGCTCTCGCCAACCTGAAGATACCTGGGGTGGGCTCTCTCAGCCAGAGCACTATCTGCAGGTTCGagtccctcaccctctctcacaaTAATATGATTGCGCTAAAACCTGTCCTCCAAGCCTGGCTCGAGGAGGCTGAGGCTGCTTACCGGGAGAAAAACAGCAAGCCAGACCTTTTCAATGGCAACGAACGCAAACGAAAACGCACGTCGATAGCCGCACCTGAGAAACGATCTTTGGAGGCATATTTTGCTATCCAGCCCCGTCCCTCTTCGGAAAAAATTGCTGCAATTGCTGAAAAACTGGACCTTAAAAAGAACGTAGTTCGTGTGTGGTTTTGCAACCAACGGCAAAAACAGAAAAGGATGAAATATTCTGCTGTGCATTAGTTCAAATAATGCCTAAAATACGACATTTTGAAGAGATAACGGGGATCTATCAACATCTCATGCCTGACTGGAATTTACTACTGAGACTCTATAGGATTTATTTAAATTTCAATTATTTCGTTCACTTTTTTTGTCCTGTTGTTTAGTTTGGAATTAAACGTATCGTGCTAAAGGTCTCTTGGAGGAAATTTTCGTTGTTGATTTTATGACTGCCTATGACACCTCTTCAATCACAGAGCTAAACTATAGGGCCTAACAAATAGAGGGAGAAAATGACTTCTCTCTCGTGTGATATGTCCTGTTGAATGCTCATAAAACCTGTTAGTTGTTTGGACAATTTAATCAATTACACTAACCATTTTGACGTTTAGGATTCATATTTAAGATGGAATGAATGTGTGTTCACTGCATAGGGGTAACACAACCACCCAAAAATGCTAATAAATGTGCTCTCTTTGTGACCTAGCTGAACTTTATTTACAGTTGTGTGTAAACGAGGCAAATACTATTCACATTATTTATGACGCAACACGAGTTGATTTTTTTTAATAGGCTAATTTTAAATAAGGCATGTCAAACCGGCATATTTTGTCATGGACTATTTTGATGTGAAAAATGTAAAACAGTTTGGAGTATCACTGAAATACTATGAGTATTTTTCTTCACTCTTGGATTTCACTTGACAAAATGAGTGAAGTTCAAACTTCATTAATAAATCATTGAATATTTTCTCAAATTCCATTGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09366 POU4F, BRN3; POU domain transcription factor, class 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1237112 lncRNA upstream 67184 53622389 ~ 53623120 (+) True G1087459
TU1237111 lncRNA upstream 68181 53621834 ~ 53622123 (+) True G1087458
TU1237102 lncRNA upstream 79035 53611064 ~ 53611269 (+) True G1087449
TU1237014 lncRNA upstream 82456 53543187 ~ 53607848 (+) True G1087361
TU1236965 lncRNA upstream 196413 53493678 ~ 53493891 (+) True G1087312
TU1237178 lncRNA downstream 36944 53729574 ~ 53730386 (+) True G1087512
TU1237183 lncRNA downstream 47874 53740504 ~ 53751607 (+) True G1087514
TU1237314 lncRNA downstream 100634 53793264 ~ 53793527 (+) True G1087637
TU1237326 lncRNA downstream 114769 53807399 ~ 53809011 (+) True G1087649
TU1237329 lncRNA downstream 117569 53810199 ~ 53810423 (+) True G1087652
XM_036937786.1 mRNA upstream 9173 53662525 ~ 53681131 (+) False LOC110537774
XM_036937788.1 mRNA upstream 9173 53662525 ~ 53681131 (+) False LOC110537774
XM_021624152.2 mRNA upstream 9173 53662526 ~ 53681131 (+) False LOC110537774
XM_036937787.1 mRNA upstream 9173 53662526 ~ 53681131 (+) False LOC110537774
XM_021624150.2 mRNA upstream 9173 53662527 ~ 53681131 (+) True LOC110537774
XM_021624157.2 mRNA downstream 109032 53801662 ~ 53804908 (+) True LOC100301661
XM_036939510.1 mRNA downstream 561089 54253719 ~ 54280957 (+) False LOC110538908
XM_036937799.1 mRNA downstream 666643 54359273 ~ 54460602 (+) False ppp2r2bb
XM_036937801.1 mRNA downstream 712160 54404790 ~ 54460602 (+) False ppp2r2bb
XM_036937802.1 mRNA downstream 747256 54439886 ~ 54460602 (+) True ppp2r2bb
TU1235839 other upstream 1032809 52649604 ~ 52657495 (+) True G1086237
TU1231639 other upstream 4009500 49679023 ~ 49680804 (+) True G1082266
TU1231371 other upstream 4389957 49291405 ~ 49300347 (+) True LOC110537713
TU1231373 other upstream 4399035 49277103 ~ 49291269 (+) False LOC110537713
TU1237606 other downstream 417060 54109690 ~ 54148962 (+) True G1087914
TU1237658 other downstream 581676 54274306 ~ 54280721 (+) True LOC110538908
TU1241153 other downstream 3032977 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 3059788 56752418 ~ 56752947 (+) True G1091235
TU1241421 other downstream 3423195 57115825 ~ 57117927 (+) True LOC110537831

Expression Profile