RNA id: TU1237014



Basic Information


Item Value
RNA id TU1237014
length 281
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1087361
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 53543187 ~ 53607848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttaagatttgttagaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccagatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1236965 lncRNA upstream 49296 53493678 ~ 53493891 (+) True G1087312
TU1236950 lncRNA upstream 61173 53481541 ~ 53482014 (+) True G1087297
TU1236939 lncRNA upstream 68252 53474717 ~ 53474935 (+) True G1087286
TU1236922 lncRNA upstream 77657 53465331 ~ 53465530 (+) True G1087269
TU1236901 lncRNA upstream 92250 53450671 ~ 53450937 (+) True G1087248
TU1237102 lncRNA downstream 3216 53611064 ~ 53611269 (+) True G1087449
TU1237111 lncRNA downstream 13986 53621834 ~ 53622123 (+) True G1087458
TU1237112 lncRNA downstream 14541 53622389 ~ 53623120 (+) True G1087459
TU1237178 lncRNA downstream 121726 53729574 ~ 53730386 (+) True G1087512
TU1237183 lncRNA downstream 132656 53740504 ~ 53751607 (+) True G1087514
XM_021624146.2 mRNA upstream 123342 53330181 ~ 53419845 (+) True LOC110537771
XM_036937776.1 mRNA upstream 410262 53004829 ~ 53132925 (+) False LOC110537768
XM_036937777.1 mRNA upstream 410262 53005287 ~ 53132925 (+) False LOC110537768
XM_036937778.1 mRNA upstream 410262 53005287 ~ 53132925 (+) True LOC110537768
XM_021624137.2 mRNA upstream 681915 52851651 ~ 52861272 (+) True LOC110537765
XM_036937786.1 mRNA downstream 54677 53662525 ~ 53681131 (+) False LOC110537774
XM_036937788.1 mRNA downstream 54677 53662525 ~ 53681131 (+) False LOC110537774
XM_021624152.2 mRNA downstream 54678 53662526 ~ 53681131 (+) False LOC110537774
XM_036937787.1 mRNA downstream 54678 53662526 ~ 53681131 (+) False LOC110537774
XM_021624150.2 mRNA downstream 54679 53662527 ~ 53681131 (+) True LOC110537774
TU1235839 other upstream 885692 52649604 ~ 52657495 (+) True G1086237
TU1231639 other upstream 3862383 49679023 ~ 49680804 (+) True G1082266
TU1231371 other upstream 4242840 49291405 ~ 49300347 (+) True LOC110537713
TU1231373 other upstream 4251918 49277103 ~ 49291269 (+) False LOC110537713
TU1237606 other downstream 501842 54109690 ~ 54148962 (+) True G1087914
TU1237658 other downstream 666458 54274306 ~ 54280721 (+) True LOC110538908
TU1241153 other downstream 3117759 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 3144570 56752418 ~ 56752947 (+) True G1091235
TU1241421 other downstream 3507977 57115825 ~ 57117927 (+) True LOC110537831

Expression Profile