RNA id: XM_036937776.1


Basic Information

Item Value
RNA id XM_036937776.1
length 3898
RNA type mRNA
GC content 0.49
exon number 24
gene id LOC110537768
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 53004829 ~ 53132925 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGGGGTAGGTTGGTACGGACGCCAGAGCTTGAGAGAAAAGGACTGCAATTTAATCGCCCAGTCGAAGAATCCGCAACTATTACCGTGTCTCGTCGTTTCACTTTCTTCCCCTTTTCATCACTAATATGATGTTATCATGAGGAAGGCACAGAAGGTTTACCTGGGATTTTTGACAGCCAAGAACTGAATATTATTTCAGCACTTCCCTCCCGGACAAGCACAGTTTTTCGCGTGCAGTTTTTTGGTGATGCCGTTTGGATCCTAGGCTAAAAGAAGCCAGATCCACGTTTGCCCGCCTGCATGTTGTCAGGAAGGTTATTgggtgtgtaatgtaatgtagccaGGTATCTGAATATTgctctctgtgttctactacctTCTTATAATTGGATTGCACATCATAAGTCAAAGATTTCTTCATCCTCCGACCTCGGATACTGTGGACTGGGAGGAAACATGGGACTGCCTGCTCTGGAGTTTAGTGACTGCTATCTGGACAGTCCCCAGTTCCGAGACAGATTGAAGTCTCACGAACTGGAACTGGACAAGACCAATAAATTCATCAAAGAGCTGATCAAAGATGGGAAGGCGCTCATCCAAGCACTGAAAAATCTGTCCACAGCCAAGAGGAAGTTTGCGGAGTCTCTCAATGAGTTTAAGTTCCAGTGCATAGGAGACGCAGAGACTGACGACGAGATATGTATCGCAAAGTCTCTACAGGAGTTTGCTGGAGTTTTGCAGAACCTGGAGGATGAGAGAACACGGATGATTGAGAATGCCGATGATGTTCTGATCATGCCACTGGAGCGGTTCAGGAAGGAGCAGATCAGCGCTGCCAAGGAAGCCAAGAAGAAATAcgacaaagagacagagaagtACTGTGCTGTACTGGAGAAGCACCTAAGCCTATCAGCAAAGAAGAAAGAAGCACATCTTCATGAAGCCGACAGCCAGGTGGACCACGTGCGGCAGCATTTCTACGAGGTGTCTCTGGAGTATGTCTTCAAGGTGCAGGAGGTCCAGGAGAGGAAGATGTTTGACTTCGTAGAGCCGTTGCTGGCATTTCTTCAAGGGCTGTTTACTTACTATCACCATGGGTACGAGTTGGCCAAAGACTTCAACCACTTCAAGACAGACCTCACTATCAGCATTCAGAATACGCGGAACCGTTTTGAAAGCACACGGTCTGAGGTGGAGTGTCTGATGAGGAAGATGAAGGAGAACCCCCATGAGCACAAGAGTATCAGCCATGACACCATGGAGGGATACCTGTTTGTACAGGAGAAACgCTCTTTCGTGTCAACCTGGGTCAAGCACTACTGCACCTACCATCGAGAGCCCAAACGAGTCACCATGGTCCTGTTCGACCAGAAGTCGGGTGGCAAAGTGggggaggaggagagcttCACTCTGAAGTCCTGCACAAGACGGAAGACGGATTCTATAGAAAAGAGGTTCTGTTTCGACGTGGAGGCTGTCGACAGGCCAGGGGTGATCACCATGCAAGCTCTATCGGAGGAAGACCGTAGGCTGTGGATGGAAGCTATGGATGGGAGAGAACCGGTCTATAACTTAAACAGAGACAGCCAGAGTGAAGGCCtGGCTCAGCTGGATGTGGTTGGCTTCAacgttgtgaagaagtttatcTACGCTGTGGAGACCAGAGGCATTGACGAGCAGGGCCTGTACAGGATTGTTGGAGTAAACTCCAGGGTGCAGAAACTCCTGGGTCTTGCCATGGATCCTAAAACCTGTGCTGACGTGGAGCTGGACAGTACAGAATGGGAGATCAAGACCATCACCAGCGCAATCAAGTACTACCTTAGAATGCTGCCCGCGCCCCTTATGACTTATCAGTATCAAAGGAGCTTCATCAAGGCAGCCAaaCTGGACAATCAGGAGGCGAGGATCACAGAGATCCACAGCATCATCCACCGGCTCCCAGAGAAAAACCGCCAGATGCTGGACCTGCTTACCAAACACTTGGCAAAtgtGGCCAGTCACCACCAGCAGAACCTGATGACTGTGGCCAACCTGGGCGTGGTGTTCGGCCCCACTCTGCTGAGGCCCCAGGAGGAGACTGTGGCCGCCATCATGGACATCAAGTTCCAGAACATTGTGGTAGAGATCCTCATCGAGAACCATGAGAGGATATTCAAGGATATGCCAGTTCCGGGAGGTGGCCCGGCCAACCTACAGCTCAACCTGCAGCCTCGGAGGaaaagcgcagagagcaaagCCCCGTCCTGCAGCGAGAGACCCCTCACCCTcttccacacacccacacacacccagaaAGTGGAGAAGAGGAACAGCGTGGTAGTGAACTCTACTCCAGAGCCCCAGCAGCTTCATCCGGCCCAGGCCAACGCCCCCCACAACAACCCATCAGCCACCCGCTCTTCCTCCACAGCAGCGGTCAACCATAACAGCAGCGGCAGCCACGGCCACAGCTGGACCCAACGCAACAGCCTGACCAGCACTGACGGAGATCAGGACGGGGGCCTGATGGCCAGGCAGAACTCACAGAGCCGCCCTAACTCACTGCTGAACCCAAAGAGCCGCACCAGTATCCCAATGAGcCCAGCCTCACCGCGCTCCCCCTCCTGGCCGATGTTCTCTGCATCCTCCAGCCCCCAGCCGGCCTCCTCCACCTCCAGTGACTCCTCCCCCATCAGTGTCCCAGGCAGGAAGGCTAGGGCCCTCTACGCCTGCAAGGCGGAGCACATCTCTGAGCTCTCGTTCATCGCAGGGACCGTCTTTGAAAATGTTCATCCCTCGAGGGAGCCTGGCTGGCTGGAAGGCATCCTAGACGGCAGGAAGGGCCTGATTCCAGAGAACTACGTGGAGTTTCTGTAGCCCTGGACCAGGACTGTACTGGACTGGGGAGACCACGCAGTTGCACTGTGCCCCTACAACTTATTGGAAGAGTCTGGAGCACAGAGCGCTTCCTGCTGTGCATGGTCATGAACCTGGAATTCAGCAGCAGActgatgtgtgtgcgtgcgtgcatgcatgatGCATGAGATGCATTGAGTTGTTGCGACGTAGGCTCATTCCCATAGTCAGACAGTCCTTGTGTCATTAAAATGCACTGCCACTTCTTTTAGCGTCTTCTATTATCAGTTGGGAGGGACTTCGGAAGACGTTTTAGTTTTGGGATACGAAAAGGGGAAAAGTTCACTCTGCAGCCCTACTTCTCTTCCAGTGTACAGTACGGTCTGTAGGAATGAAGATGATTGTGTAGGGAGCTTTCATCTCTAAATGATGGGGAGTGTTTTTCAGTGAATACTGCTATAAATGTGAGCACTTGCTGCCTTGCCCGGTATTCCCCTAGACAAGACAGAACACAACTGCTGTTTACCTACCTGCACATTATAGAGGTGGGAGCATCCTGAATGTCTTTCCTCCCTGTTCGACAGATTTTGTAATAGCTCTTTTTTTTTGCTCAGAACTACTAGGTGAAATTGTCTCGATAAACCTGGAAAGGAAGTTAACCGAACTGTTTTCATTTAGGACAATAACATTTTTTTAGTATTTTTTTCTTTCATTTCTTAACATGTATATAAAATGGGGAGTGTTTTGTGAAACTAGACTACTTTGTTCATATGTAAGCCTTGTATTTATAATAATTTTCAAAGATGAGATCCTGAACTGTATTCTTTTGGGGTGTAATAACATTTGTAAATACATGACATTTGATAAGATCACATTTTTTAACTAGCAAATTTTATATTTTGTATTGTAGCATACTAAGTTAATTTTAGCATCTCAGTTGCTAAATTTGTCGTCATTTGGTTCATGGCCATTGGGAGCTTTAATATTCTTTCTGATCAAATAAATCATGAACAAGGTTGTACAGAATTTCATCTATTAAAGATAAACAAACTGGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1236337 lncRNA upstream 2599 53001922 ~ 53002230 (+) True G1086705
TU1236336 lncRNA upstream 2995 53001524 ~ 53001834 (+) True G1086704
TU1236279 lncRNA upstream 38482 52966086 ~ 52966347 (+) True G1086649
TU1236265 lncRNA upstream 49358 52955240 ~ 52955471 (+) True G1086635
TU1236263 lncRNA upstream 49728 52954871 ~ 52955101 (+) True G1086633
TU1236342 lncRNA downstream 6125 53139050 ~ 53186018 (+) True G1086710
TU1236519 lncRNA downstream 157790 53290715 ~ 53291309 (+) True G1086881
TU1236604 lncRNA downstream 255932 53388857 ~ 53436842 (+) True G1086963
TU1236900 lncRNA downstream 316009 53448934 ~ 53449162 (+) True G1087247
TU1236901 lncRNA downstream 317746 53450671 ~ 53450937 (+) True G1087248
XM_021624137.2 mRNA upstream 143557 52851651 ~ 52861272 (+) True LOC110537765
XM_021624136.2 mRNA upstream 153504 52843119 ~ 52851325 (+) True endou2
XM_021624135.2 mRNA upstream 162104 52836678 ~ 52842725 (+) True LOC110537763
XM_021624134.2 mRNA upstream 183032 52804227 ~ 52821797 (+) True LOC110537762
XM_021624121.2 mRNA upstream 772601 52164072 ~ 52232228 (+) False LOC110537755
XM_021624146.2 mRNA downstream 197256 53330181 ~ 53419845 (+) True LOC110537771
XM_036937786.1 mRNA downstream 529600 53662525 ~ 53681131 (+) False LOC110537774
XM_036937788.1 mRNA downstream 529600 53662525 ~ 53681131 (+) False LOC110537774
XM_021624152.2 mRNA downstream 529601 53662526 ~ 53681131 (+) False LOC110537774
XM_036937787.1 mRNA downstream 529601 53662526 ~ 53681131 (+) False LOC110537774
TU1235839 other upstream 347334 52649604 ~ 52657495 (+) True G1086237
TU1231639 other upstream 3324025 49679023 ~ 49680804 (+) True G1082266
TU1231371 other upstream 3704482 49291405 ~ 49300347 (+) True LOC110537713
TU1231373 other upstream 3713560 49277103 ~ 49291269 (+) False LOC110537713
TU1237606 other downstream 976765 54109690 ~ 54148962 (+) True G1087914
TU1237658 other downstream 1141381 54274306 ~ 54280721 (+) True LOC110538908
TU1241153 other downstream 3592682 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 3619493 56752418 ~ 56752947 (+) True G1091235
TU1241421 other downstream 3982900 57115825 ~ 57117927 (+) True LOC110537831

Expression Profile