RNA id: XM_021624121.2


Basic Information

Item Value
RNA id XM_021624121.2
length 6447
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC110537755
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 52164071 ~ 52232228 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACTATGTGAAAGATTTAGCTATAGCATACTTCTTACCGCCATATCAGCTGTTTGCTGGATCTATTTAGTAGCACCCAATTGAATACACGTCTGTCGGACGCTCAAACCTGCCAAACCAACTCTCTCTCAACATTTTATGCGGCATTTCTAATCTAGCAAAATAGCAACCAAAACGATTTAGGGTGCATATTTTAAGGATAGTAGCAAGCTAAGGTTTATGTTCATCTCTCCACATATCTGCTTCCGCGCGATGAAACCACGCATGTGTTGATCTGTGCTGCAGCAACGTGCATCCGTTCCTCTTTGACCCCAGAGTTAATCTGCATTCAGACTGACGATCCAATATATTTCTCAGATTTGGGATATTAGGCTATTCCGGAACCGTTGTATTTATGTAGTTTTTACTATTATTTCGTATGATCGGTCAAGCTTGCTTCGATTCAATCAGTTTTGTGACCGTTTTCCTCAACACTGCAGCAGGTCTACATTTTCCCAAACCGAATGCTAACGCGAGCCGCTTATGCTATTCGCGTAATGTATCACCGTGAGGATAGACAGTAAATAAGGGGACCCGTCCATCTGCAATAAAGAGGAAAAGAAGATGGTGATAATGGCTCCTACAAATGTAGCATCTAAATGCTCGACAGCGATGGCGAATGCTTCCTTCCCTGTGAAGCTATTTCTCTGGGTGTTTTTATTCGCTCATCTTCCTACAAGCTCTATCCAGACTGAAAACGACGATGATGAAGTGACAAACAAAACTTGGGTGTTGACTCCCAAAGTGTACGAGAGCGATGTCACCAACATCCTAAACAGCCTACTAGATGGCTACGATAACAAACTGCGACCAGATATAGGAGTCAAACCAACCGTGATCCACACGGACATGTTTGTGAACAGTATCGGCCCAGTAAATGCTATCAATATGGAGTACACCATCGACATCTTTTTTGCCCAGACGTGGTATGACCGGAGATTGAAGTTCAACAGTACCATGAAGGTCCTGCGTCTCAACAGCAACATGGTGGGCAAGATCTGGATCCCCGACACCTTCTTTCGCAACTCCAAGAAGGCCGACGCCCACTGGATCACCACGCCCAATCGCATGCTTCGGATCTGGAACGATGGACGGATACTCTACACACTGCGGTTGACTATTGATGCCGAGTGCCAGCTTAAACTGAACAACTTTCCAATGGATGAGCACTCCTGTCCCCTGGAGTTTTCAAGCTATGGCTACCCCAGAGAGGAGATAGTGTACAAGTGGAAGAGGAGCTCCGTGGAGGTGGGAGACATCCGCTCCTGGAGGCTCTACCAGTTCTCCTTTGTTGGCCTGAGGAACACCTCCGAGATCGTCAGGACCGTGTCAGGAGACTACGTTGTTCTGACAGTCTTCTTCGACCTGAGCAGGAGGATGGGTTACTTCACCATTCAGACCTATATCCCCTGCACCCTCATCGTTGTCCTCTCCTGGGTCTCCTTTTGGATCAACAAGGATGCTGTACCTGCTAGAACATCCTTAGGCATTACCACTGTGCTGACCATGACTACGCTGAGTACCATAGCCAGGAAGTCGCTGCCTAAGGTATCCTACGTGACGGCCATGGACCTCTTTGTGTCCGTGTGCTTCATCTTTGTTTTCGCCGCTCTGATAGAGTATGGAACACTGCACTACTTTGTGAGCAACAGGAAGCCAAGCACAAAAAAGGACAAGAAAAATAAAAACCCGACACCTACGGTGGACATACGCCCTCGCTCAGCCACCGCCATCCAGATGAACAACGCCACCCACATGCAGGAGCGGGATGAGGAGTATGGCTACGAGTGCCTAGACGGCAAGGACTGCACCAGCTTCTTCTGCTGTTTCGAGGACTGCCGCTCCGGGGCCTGGCGGCACGGGCGGTTGCATATCCGTGTCGCCAAGATAGACTCGTACGCTCGCATCGGTTTCCCCACCGCTTTCGGTCTCTTTAACCTGGTTTACTGGATCTCCTATCTCTATCTCTAGATCCAGCGTGTAGCCAGACTTAGAATATATGTTCTGCTCCAACTAGACCATTTTTCAGAAGGGGACCCACTGAAATGTTTTCCTTTTCCTTTTGTTTCTGTTTGATTTTTCTATGTTTGTTAATTCATATTTCTCATAATTTCTTTATATGGTTGAAGCAAAAGTTGTAGCAAAACCATTAGGCATGCAGGGATCTGGAGTCCGATAGTGGGGACTGTGCTTTGGGTAAGGCAAGAACCTAAGTTCACCGTAGTGATTCTGCAggactacattttccagattcCCCTTGATCAGATAATTGGTTTACGTAGAAGGTAATCGCAGTCAGGGCCgcttcaatgttgttgtttttttgtatcTGCCCTTAGTCAGTAAATTAGATCACAGTAAACATTTTCACTCAAACTGAAAAAGTATTAAGGCATGTTCCCGATTTCTTGCGTTAACAAGTCACGCATGCGCCGTAGAAGACAAACGGAAGATTTGACATCAGCTTATTTTCCCCATCTTTTAAAATATGCATTTACTTATTGCTGTATTCCATCCATCCAAAATACAAAATAAGCTAAATCTCAAGCACTTTAATAGCTATGTAGGTTGAACAGTAAGTATGATTTTCAATGATAATTTGATAGCTAGGTTTCTTTCATCTAACTGTGAAACTTTACTTTTACACAGTTAAACATGCATTTTTTTGAATGTGTGGTCAGAGCGCTAGAAAATACTGTTTATGGTCAATGGTCAACTGTACagacactgtatatattttattattatgtAGTGGTTTACATTTATTGCATGCACCTTTCAGGCCCAAAATCAACACAtgttttaaaggggcaatccacAGTTGTTACATCCATTTACCGACATATAAATTAATGATATTCTCATTGATACTTGAAGTTATAAAGGCCTCATGAGCTTACTTCAACTGTCCTACCCCATCCCAACCCAGCATATAAGCtcgttttactccaatgtttgtgaacattgtaaatgtaaacaaacactgtttcGCCTCAAAATATGTTTAAACCCATCATTTAGATTTCatgaatggtcagtccttgcatcaatAACCCTGTCTGTAAatttaagagtggttacatttcttcaggcccatccctcagctttttacaaaGACAGAGGTGGGGTATCTGTTTGTTATTGTTTAAACTGTGGATAGCCCCTTTAAGGTCTTCTATTGTTGGCTATGGATACAAAAAAAGAACACTGCTGATTATCCATCTGGATTTCGTCTTACTTTTTAGGAAAAGTAGAAAATGAGACAAAGTCAGATTTTGTCTTATAAATTAACGTTAATCTCTACCAATATGTATTACAAGAGGATCAATCCAGACCTTACAGGGAAAACGTTGTTATATCAACTTTTATTAACTTGTCGACTGCTCTGAGAAACTCTTCCCTTTCAAACATTTTGCTATTGATGGCTATCTTCAATTGACACACAAGTATGGCTGTGCTGGCTCCTTTGGGAAGTGTGTAGATAAGAAATAGGCATCAAAAACAAATGTATAGTTTTCTTACATCGAAACATATTTTCTTACATAAAAACATATTctgctccctttctctcccccacaACCACTTGGTGGAAGTGAATTTCAAGCAAACACATCAAGCAGTGTTTTACTTCATTCAGCTGGCACATTGAGTGTCTACAATGGAAGCGGCTGTAGTTCTGAATGCGTACACCCATCAAAATGACAAAACTCTCAGTGACAGAAAACAAACTCCCATTTGTCATAAGACTGAACTGCATTACTTAGTCACTGCATTAAAACAGGATCCATTCCATCTGTCTCAATGGGTGGTTTAGAGggacttaaggcaaaaacaaaccATTTAACTTGAGGAATATTGATGAACATGACAGCTCCATGGAGAAGAAAGCATCTGCTTGTGACCAGACCAGATGCATAAGCCTTACTCTCTTTGAAGAGAAACACTGTGGAAATTACAATGATCTGACGCTGAAAATGTATTGAAAGATCTGGGAGAAGTTCAggaatttattttttttgtttgttttgctttTCTGTGTTTacaatggctcattaaatcattAATGTGTCAATACATCATTACTCATTTATAGTGTGGCACATTGTGAATGTCAACATAAGTACTCAAACTATTTGTGCTTCACATCATATGCTAATGGAACGCTTACAATGCAATTTATGGGGTACTTGTATACCCAAATCATGGCCAACCTGTTCCAAAAGAGTACCTTAGCTAAAGGCAGCCAGAGGATGTTAAAGCAGTGCTTTAATctagaccagtgtttcccaaacacGGTCCTGGGGCCTCCCATTGGGGCACGTTTTGTTttctgccctagcactacacagctgatttaaataactcatcatcaagctttgattatatGAATAGGCTGTGCAGTGCTCGGGCAAAAAACTAAACTTGCCCCCCTGGGAGGACCcgggaccaagtttgggaaaccctgatcgAAATGAATAAGTCATTTTACTGTACATATTGTAAATCACATGATATTGTGTACATAGTAGATCACAAAAGGAAACAAACACTTATCAAACCCTTCAATTTTTGAAAGGGGCAATGATAGGTTTAATTTTCTTAATGTATCCCCTTTCATTGATATCATTATTATCATTGCATTATGCTGGACTGTGTGGGATATTGTAGGGCAGGTGTAttctacgaggtccggagcctgctggttttctgttctacctgataattaatagCACCCacttggtgtcccaggtctaaataagtccttgattagaggggaacaattaaaaaactggctttgaggtccagagtagAGTTTGAGTGTTGTAGGGTATTTTTCAAGGAAATCGTCGTATTTAGAAAGCCCTCAACAAAACAGAGATGGAGAATGTCCTTTGTCAACAATATCATAGAGACATCATTTCGTTCTATAATGAAtttatcttgttgttgttgtattttctatgttgtggtcTACATAGGCTCTAAAAGACCAGTTATAGTCTGTTCATTGAATGGTATGACTAAAAAGGTAGGTGGCGAAGTTACTTATTACAGCCTCAATTGACAATATCTTTTCAGACATTCAACTGTGATATTAGCTACTCCCTGAGGTACTGAACATACGTGATACTCTAGTCTAAAGTGACCGTCAGAGTTTCTGCATTAAATTGTAAAGTTTCTTAGCAACAACTGTAGTACCCATTGTCAGTTGAACGAAGTGGAAAGTGAGTGGAATTTGAAGCTCTTCCCCTTGTGCATTCACTAGTGGTCCTCTATTTTGTACCTGTTGCGAAGCTATCACTCAGTACAAGGTTTTGTcttaagggtgtgtgtgtttttttctctcacttgAACAGAAAGGAATGGATTTTTTTGGCCACTTGATAGTTTACTTCAGTTGAAATGGAGAGGAATGTAAGGGTGTGGAAGAACAACTTTAAGTGCCAAACTTTGACACAAATGTGATACATCCATTCAGAAATCCATAGTGTTCAATGATCTCTTAGTCAAAATGAACTGTTATTTTGCGAAATGGGAGAAACGCATTTTGTGTTCTTCGAGAAATAATATTTAACAGATATAATTTACTattaacacatacatacacgagACATTATTTGTATACCTTCATTTACCATTATTACATTTCACAGACGCTGTTATCCAGATCAACTTGCAGTAGTGAGTGTGTACACTTTCTGTACTGGTCCCctatgggaattgaacccacaacccctggtgttgcaagtgcaatgctctactaactgagccatacGGAACATTATCTCATGGTCTATAGCTTATGAACAAATATCAAAGCACAAGGACCAAACCGTGCATTAGCTTTATCTTAATGCCTCTGTCTCAGAGACACACTTTCATCCATTCAAGTATAACCTTTGATAAAGAGAATGAGTTAgcatctttttttgtttgtttgaagaAAGGCTGAATGAGCACATTCAGAAAGTAGAGATGTTTTTAACTGTGAGAAAGTAGTTACTGAGGTATCAAGTGTATGTATGTGGTTTATAAATACCCAATGACCAACCAGTCATATTGAACGGTGCTGGCATACTAAATTTGATTATTTATATCAACTATTTAAATGTTGCTTTACTATACACAAAAAAACATTATATTGTATTTTTGTGATTTCTTTATTTTCTTATGTTAGTTTACACACATATGGTAtggtacatacagtattacacaTAGTTAAAGGTTTTGGAATTCTCCTGGTACTTGGAAGGAGATAATCATAAAAGATCGTGTGCACACGATGTATAGGTCAATCACAAATATGAATATATTTAACATTTAGTTAATGTGGGTATTGCTCAGCTTATTTTCATTTGGCCTCCATCTCTTCGACCATCTCATGACCTAATTTAGGTTAGAGGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1234912 lncRNA upstream 90748 52072892 ~ 52073324 (+) True G1085339
TU1234909 lncRNA upstream 94592 52069257 ~ 52069480 (+) True G1085336
TU1234850 lncRNA upstream 98829 52064943 ~ 52065243 (+) True LOC110537754
TU1234849 lncRNA upstream 98903 52064943 ~ 52065169 (+) False LOC110537754
TU1234905 lncRNA upstream 108394 52054284 ~ 52055678 (+) True G1085332
TU1235024 lncRNA downstream 24292 52256520 ~ 52256783 (+) True G1085441
TU1235334 lncRNA downstream 32768 52264996 ~ 52265234 (+) True G1085744
TU1235358 lncRNA downstream 48566 52280794 ~ 52280993 (+) True G1085768
TU1235370 lncRNA downstream 58310 52290538 ~ 52290793 (+) True G1085780
TU1235377 lncRNA downstream 66437 52298665 ~ 52298984 (+) True G1085787
XM_021624115.2 mRNA upstream 39672 52087532 ~ 52124400 (+) False LOC110537753
XM_021624113.2 mRNA upstream 39672 52088127 ~ 52124400 (+) False LOC110537753
XM_021624114.2 mRNA upstream 39672 52088534 ~ 52124400 (+) False LOC110537753
XM_036937770.1 mRNA upstream 39672 52089040 ~ 52124400 (+) True LOC110537753
XR_005035006.1 mRNA upstream 98900 52026943 ~ 52065172 (+) False LOC110537754
XM_021624134.2 mRNA downstream 571999 52804227 ~ 52821797 (+) True LOC110537762
XM_021624135.2 mRNA downstream 604450 52836678 ~ 52842725 (+) True LOC110537763
XM_021624136.2 mRNA downstream 610891 52843119 ~ 52851325 (+) True endou2
XM_021624137.2 mRNA downstream 619423 52851651 ~ 52861272 (+) True LOC110537765
XM_036937776.1 mRNA downstream 772601 53004829 ~ 53132925 (+) False LOC110537768
TU1231639 other upstream 2483268 49679023 ~ 49680804 (+) True G1082266
TU1231371 other upstream 2863725 49291405 ~ 49300347 (+) True LOC110537713
TU1231373 other upstream 2872803 49277103 ~ 49291269 (+) False LOC110537713
TU1231375 other upstream 2872803 49277152 ~ 49291269 (+) False LOC110537713
TU1231374 other upstream 2872821 49262320 ~ 49291251 (+) False LOC110537713
TU1235839 other downstream 417376 52649604 ~ 52657495 (+) True G1086237
TU1237606 other downstream 1877462 54109690 ~ 54148962 (+) True G1087914
TU1237658 other downstream 2042078 54274306 ~ 54280721 (+) True LOC110538908
TU1241153 other downstream 4493379 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 4520190 56752418 ~ 56752947 (+) True G1091235

Expression Profile