RNA id: TU1234905


Basic Information

Item Value
RNA id TU1234905
length 1341
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1085332
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 52054284 ~ 52055678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actcttttctcttcatatatcaatgatgtcgctattGCTGccggtgattctctgatccacctctgcacagacgacaccattctgtatacttctggcccttctttggacactgtgttaacaaacatccagacgagcttcaatgccatacaacactccttcggtggcctccaactgctcttaaatgctagttaaactaaatgcatgctcttcaactgatcgctgcctgcacccgcccaactagcatcactactctggacggttcttagaatgtgtggacaactacaaatacctaagtgtctggttagactgtaaactatccTTCCAGACTAACATTAggtatctccaatccaaaattaaatctagaattggcttcctattttggaACAAAGCTTCCCTCACTCAAGCTGCTAAagataccctcgtaaaactgattatcctaccgatccttgactttggagatgtcatttacaaaatagccttcaacattctactcagcaaattagatgtagtctatcacagtgccatacattttgtcaccaaagccccatatactacccaccactgcgacctgtatgctctcgttgtctggccctcgcttcatactcgtcgccaaacccgctggctccaggtaatctataagtctttgctaggtaaaaccccgccttatctcagctcactggtcatccccaaagccaactccccctctgaccgcctttccttccagttctctgctgccaatgactggaactaattgcaaaaattactgaagctggagacttatatctccctcaataactttaagcatcaactgTCAAAACAGCTTACTGATGATCACTGCAcatgtacacagcccatctgtaaatagcccacccaactacctcatccccatattgttatttatttttgctcttttgcaccactGTATctatacttgcacatcatcatctgcacatctatcactccagtgttaatgctaaattgtaattctttcaccactatggccgatttattgccttacctccttacttcatttgcacacactgtatacagacatttcgattgtgttattgactgtacgtttgtttatcccatgtgtaactctgtcttgttgtttttgtcgcactgcttggctttatcttggccaggacatAGTTGTATTTGAGAACTTTTTCTCAATGGTCTatctggttgaataaaggtgaaataaaaaaaaatacattttacttttttttgtgttatttaaaGTTAATTGAAtttacacaatactccataatgtcaaagtgaaattatgtttttagaaatgtttacaaatgaataaaaaaggaaaaactgaaatgtctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1234879 lncRNA upstream 36349 52017672 ~ 52017935 (+) True G1085311
TU1234870 lncRNA upstream 46581 52007454 ~ 52007703 (+) True G1085302
TU1234866 lncRNA upstream 51882 52002097 ~ 52002402 (+) True G1085298
TU1234857 lncRNA upstream 64089 51989904 ~ 51990195 (+) True G1085289
TU1234854 lncRNA upstream 68393 51985677 ~ 51985891 (+) True G1085286
TU1234849 lncRNA downstream 9265 52064943 ~ 52065169 (+) False LOC110537754
TU1234850 lncRNA downstream 9265 52064943 ~ 52065243 (+) True LOC110537754
TU1234909 lncRNA downstream 13579 52069257 ~ 52069480 (+) True G1085336
TU1234912 lncRNA downstream 17214 52072892 ~ 52073324 (+) True G1085339
TU1235003 lncRNA downstream 155490 52211168 ~ 52211375 (+) True G1085422
XM_021624107.2 mRNA upstream 466393 51547730 ~ 51587891 (+) True LOC110537746
XM_036937759.1 mRNA upstream 603476 51414096 ~ 51450808 (+) False LOC110537744
XM_021624115.2 mRNA downstream 31854 52087532 ~ 52124400 (+) False LOC110537753
XM_021624113.2 mRNA downstream 32449 52088127 ~ 52124400 (+) False LOC110537753
XM_021624114.2 mRNA downstream 32856 52088534 ~ 52124400 (+) False LOC110537753
XM_036937770.1 mRNA downstream 33362 52089040 ~ 52124400 (+) True LOC110537753
XM_021624119.2 mRNA downstream 108393 52164071 ~ 52232228 (+) False LOC110537755
TU1231639 other upstream 2373480 49679023 ~ 49680804 (+) True G1082266
TU1231371 other upstream 2753937 49291405 ~ 49300347 (+) True LOC110537713
TU1231373 other upstream 2763015 49277103 ~ 49291269 (+) False LOC110537713
TU1231375 other upstream 2763015 49277152 ~ 49291269 (+) False LOC110537713
TU1231374 other upstream 2763033 49262320 ~ 49291251 (+) False LOC110537713
TU1235839 other downstream 593926 52649604 ~ 52657495 (+) True G1086237
TU1237606 other downstream 2054012 54109690 ~ 54148962 (+) True G1087914
TU1237658 other downstream 2218628 54274306 ~ 54280721 (+) True LOC110538908
TU1241153 other downstream 4669929 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 4696740 56752418 ~ 56752947 (+) True G1091235

Expression Profile