RNA id: XM_021624134.2


Basic Information

Item Value
RNA id XM_021624134.2
length 3592
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC110537762
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 52804227 ~ 52821797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGGTTCAGAATGAAATCTTTCAAATAGAAAGGTTCAGAGCCAAATATCTATTGACAGAAAGGTCTAGAGCCATCGAGAACTATTCAATTCTCGCGATATTGCATTAAGATTCCGCGTGAACTCGCAAAACCACCTTGCATCTACCGGTGTGCACCACTACCACCAGAGTACTCCGTATTGTGCTGTGGATTATGAATTCAATTTGAATTTACACTTTTGATTTAACATTATCCACTGACTTTTATACGTCTTTCAAAATAATTCAAACACgtttctgttaaaaaaaaaaagaagagttaTCTACGTCTCCATTTcatacagtagtagaatacaggCAAGGTAGCGTGGAAGATGTCAGTGGTGGGAATTGATCTGGGCTTTCAAAGCTGCTATGTTGCTGTAGCTCGAGCCGGAGGAATTGAAACCGTGGCTAACGAATATAGCGACCGAAGTACACCAGCATGTGTGTCCTTTGGACCACGTAATCGTTCAATAGGAGCGGCAGCCAAAGGCCAGgTTGTAACAAATTGTAAGAACACTGTTCAAGGGTTCAAGCGATTCCATGGCAGGGCATTTTCAGACCCCTATGTCCAGTCAGCAAAATCTAGCCTGGTTTACGACCTGGCCCAGTTGCCTTCTGGGTCGACCGGGATCAAGGTGatgtacatggaggaggagaaAGTCTTCAGCATTGAACAAGTCACTGCCATGCTGCTGACCAAACTGAAGGAGACTGCTGAGACCGCAATGAAGAAACCTGTGGCTGATTGTGTTATCTCTGTCCCCAGCTTCTACACTGACGCAGAGAGGAGGTCCGTTATAGATGCTGCTCAGATTGCAGGACTCAACTGCCTACGACTTATGAATGAGACCACTGCAGTTACACTGGCATATGGGATCTATAAACAAGATCTCCCTGCCCCTGAGGAAAAGCCAAGAAATGTGGTGTTTGTAGATTTGGGCCATTCTGGTTATCAGGTCTCCATCTGTGCCTTCAACAAAGGAAAGCTCAAAATGCTAGCTTCTGCGTCTGACGCAGCATTGGGTGGCAAAGACTTTGACGAGGTGTTGGTGAACCATTTCTGTGAGGAGTTTGGCAAGAAGTACAAGCTGGATGTGAAAACCAAGCCCAGAGCCCTGGTTCGTCTCTACCAGGAGTGTGAGAAGCTCAAGAAGCTGATGAGCGCCAATTCCTCTGATCTGCCACTCAACATTGAGTGCTTCATGAATGACATTGACGTCACTGGGAAACTTAACAGAGGCCACTTTGAGGAGATGTGTGCAGGGCTTCTGGCCAAAGTGGAGGCTCCCCTGCGCAGCGTCATGGAACAAGCCAAGCTGAAGAAGGAAGACCTCTATGCTGTGGAAATAGTGGGCGGTGCCTCCAGGATCCCAGCCGTCAAAGAAAGAGTTTGCAAATTCTTTGGAAAAGAACTGAGCATGACTTTAAATGCAGACGAGGCTGTTGCAAGAGGATGTGCACTGCAGTGTGCTATCCTGTCCCCCGCCTTCAAAGTCAGAGAGTTTTCCATCACTGATGTTGTGCCCTATCCCATCTCCTTGAAGTggaactctgctgcagaggagggGTTAAGTGATTGCGAGGTATTCCCAAAGAACCATGCAGCACCCTTCTCCAAAGTGTTGACGTTCTACCGGAGAGAGCCCTTCTCCTTGGAGGCCTACTACAACAACCCTAAAGAGCTGCCGTACCCAGACCCCTCAATAGGTCAGTTCGTGGTCCAGAAAGTGGTTCCCCAGGCGAATGGTGAAAGCTCAAAGGTTAAGGTGAAAGTTAGGGTGAATGTCCACGGTGTCTTCAGCGTGTCCAGTGCCTCCTTAGTGGAGGTCCTGAAACCTACTGAGGGAGAGGAGCCCATGGAGACAGACCTTACTGGGAAGGAAGACGAGAGTAAGATGCAGACTGACCAAGATGAGAAAGCCCAAGGTGATGGACAGAAAGACAATGCTGACAAGAAGTCTGAGACTGAGGAAATGGAGaCGTCAGAGGATGGAAAAGAGAAGAATCAAGCTTCATCAGCAAAGAAACCAAAAGTGAAAACGAAGACTGTCGAGCTCCCAATAGAAAACAGCCTGCGCTGGCAACTAACCAACGACACAGTCAATCTGTTTGTGGAGAATGAGGGTAAGATGATTATGCAGGACAAGCTGGAGAAGGAGCGGAACGATGCCAAGAACAACGTAGAAGAGTACGTCTATGATATGAGAGACAAACTGCATGGATTGTTGGAGAAGTTTGTCAGTGAATCTGACAGAGACACCTTTTCGTTAAGACTTGAGGACACCGAGAACTGGTTGTATGAAGACGGCGAGGACCAACAGAAACAAGTGTACATCGACAAACTGGCTGAATTAAAGAAACTTGGGCAGCCCATCCGGGAAAGATACAATGAGGCTGAGGAAAGGCCAAAAGCATTCGATGAACTCGGAAAGCATATCCAACAGTTCATGAAGATTGTAGAAGCTTACAAAACAAAGGAGGAGCAGTATGAGCATTTGGATGAGTTGGAGATGTTGAAGGTGGATAAGCAGGTGAACGATGCCATGATCTGGATGAACAGCAAAATGAACGCGCAGAGCAAACACAATCTTACCCAGGAGCCTGCTGTCAAAGTCAGAGAGATTCAGGCAAAAACAAAGGAGCTTGACTCGGCTTGCAACCCAATCGTGTCAAAACCCAAACCTAAAGTGGAGGTCCCCAAGGATGAGAAGGCAGAGCAGAATGGGCCAGTAAATGGACAGGAGGGCACAGAGGCCCAGCCAGGCAGCCCAGAGAAGGGTGCAGCAGGGGGCACGGTGGCTCCTGAATCTGCAGAGGGCAACAAACTGCCAGAGATGGACATTGACTAACTGCTGCAGCTGCCTCTCTAACCCCTCTGACATCTTGCTGATGGCCTCTCTTTTGATTACACAATTGGACTATTCCTTTAAATACTCTCAATCTGCCTTCTTGGCATGTAACACTTTACCTGTTGATATACAATGATAGCGTATTGATCAGGCTGTTTGACATAAAATACTATAAGGCTGCAGGATGGAAACTTGTTTTCTGTGTTTCGCTTCAATGGCCATTTTGCAAGGAATGTTCATCTCACTTCCACTGAGAATGTCATATTAAGAGGTGGTACGCAGAGGAAAGTAGTAAAGACGTTTGATGAAATTGTTAACTATTATTGATTGGGGGTAGAGGTTCAAGCTTAGCATCATCATTATTCCCCATTGGATATGACTTACTGTGCATTTGTTTCACTTAAATCTTGCACCTGTTGGATAAATGGATAGGACACCCTGCTGGGGAGAGATTGGATGGAATAAAGGTTAATGTATTCAGAGATGGGTATTATAGAGGCACCAATTATCTGTCCACTATATTCAATTAGATTTGAGTTACTGTCATGCAGTATTTTAATGTAAGGCTGTCTCTTTAAAAGCAATGGTCTGTGAGTTGTTCTCTGGTATAgacttgttttgtttttctattcTACAACAGTGTGGATGTGTGGGGAAGACCAGTTTGGTGCTGTTACCACTAACCaaaagcaaaataaatacatgttggtGTCTGAGAA

Function

GO: NA

KEGG:

id description
K09489 HSPA4; heat shock 70kDa protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1235760 lncRNA upstream 259858 52544128 ~ 52544369 (+) True G1086161
TU1235751 lncRNA upstream 266197 52537802 ~ 52538030 (+) True G1086152
TU1235746 lncRNA upstream 267617 52536379 ~ 52536610 (+) True G1086147
TU1235710 lncRNA upstream 290186 52513416 ~ 52514041 (+) True G1086113
TU1235709 lncRNA upstream 291160 52512867 ~ 52513067 (+) True G1086112
TU1235987 lncRNA downstream 26229 52848026 ~ 52848279 (+) True G1086381
TU1235996 lncRNA downstream 48265 52870062 ~ 52870307 (+) True G1086390
TU1236006 lncRNA downstream 57746 52879543 ~ 52879750 (+) True G1086400
TU1236012 lncRNA downstream 63398 52885195 ~ 52885522 (+) True G1086404
TU1236018 lncRNA downstream 72772 52894569 ~ 52894887 (+) True G1086409
XM_021624119.2 mRNA upstream 571999 52164071 ~ 52232228 (+) False LOC110537755
XM_021624121.2 mRNA upstream 571999 52164072 ~ 52232228 (+) False LOC110537755
XM_021624120.2 mRNA upstream 571999 52164073 ~ 52232228 (+) True LOC110537755
XM_021624115.2 mRNA upstream 679827 52087532 ~ 52124400 (+) False LOC110537753
XM_021624113.2 mRNA upstream 679827 52088127 ~ 52124400 (+) False LOC110537753
XM_021624135.2 mRNA downstream 14881 52836678 ~ 52842725 (+) True LOC110537763
XM_021624136.2 mRNA downstream 21322 52843119 ~ 52851325 (+) True endou2
XM_021624137.2 mRNA downstream 29854 52851651 ~ 52861272 (+) True LOC110537765
XM_036937776.1 mRNA downstream 183032 53004829 ~ 53132925 (+) False LOC110537768
XM_036937777.1 mRNA downstream 183490 53005287 ~ 53132925 (+) False LOC110537768
TU1235839 other upstream 146732 52649604 ~ 52657495 (+) True G1086237
TU1231639 other upstream 3123423 49679023 ~ 49680804 (+) True G1082266
TU1231371 other upstream 3503880 49291405 ~ 49300347 (+) True LOC110537713
TU1231373 other upstream 3512958 49277103 ~ 49291269 (+) False LOC110537713
TU1231375 other upstream 3512958 49277152 ~ 49291269 (+) False LOC110537713
TU1237606 other downstream 1287893 54109690 ~ 54148962 (+) True G1087914
TU1237658 other downstream 1452509 54274306 ~ 54280721 (+) True LOC110538908
TU1241153 other downstream 3903810 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 3930621 56752418 ~ 56752947 (+) True G1091235
TU1241421 other downstream 4294028 57115825 ~ 57117927 (+) True LOC110537831

Expression Profile