RNA id: XM_021624135.2


Basic Information

Item Value
RNA id XM_021624135.2
length 2722
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110537763
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 52836678 ~ 52842725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTaaacatttatgaaaacaaaaatgttagcagtgtggttaaggtttggtttaaaatgtaagaagataaattgtagaaataggcggagtttatgactttgtggctgtgttaactagtgaaaACCAATACGTAATTTGTGGTGGCTGAAGTAAAAGGAATGTAAATGTCGGAGGACCAGGAAGCCCAGGAGGATGAGTTGCTTGCTCTAGCGAGTATTTACGATGAAGAGGAGTTTCACAGAGCCAAATCTGCACAGGGCGGTGAGATACAACTATGCCTTGAACTTCCTCCTAGTTTCAAGTTGATAGTCGATGGAAACAAGCAGACCGAATATGACATATCTTTCCTACCTCCTCTGGTGCTTAACTTTGAACTTCCTGCTGACTACCCTTCTTCCTCATCTCCGGTCTATACACTAAGTTCCAAATGGCTGTCAAGGGACCAGaTGACTTCTCTATGCAAGCGCCTGGATGGGCTGTGGGAGGAGAACCAGGGCTGTGTTGTTCTCTTCACATGGATCCAGTTCCTTAAGGAGGAGGCCTTTGCCTTCCTCGACGTCAAGTCTCCCCTGGAGGTGGTCAAGGGGGGCAACGCTCCGGTGGAATGGAAGAGGAGTGAGGCTGGTGTGAAGCGGGCGGGGAGTCTAACCGGGGAGAAGGATAAACTGGAGCCCCTGCTGGAGCTGGACCCCCGTGCTGTCCTGGTGGTTGACCCCCGTACTGATATCCTACCTCAGCTCCTGGACTTTGATGAAGCTCAGCGGCAGAAGGTGTTTGACGCCAAGGCGTTCTGCTGTGGTATCTGCTTCATGGAGAAGCTGGGCTCGGGCTGCCTGTGCTTTAAGGAATGCCAGCATGTGTACTGCAAGACCTGCATGACGGAATACTTCCAGATTCAGATCCGCGACGGCAACGTTCAGTGCCTTAACTGCCCCGAGCCCAAGTGCACCTCCTTGGCTACACCCTCACAGGTCAAGCTCCTTGTCGGGGAGGAGTTGTTTGCGCGTTATGACCGCCTTCTGCTTCAGTCCAGCCTGGATCTGATGGCTGACGTGGTGTACTGCCCTCGCCAGTCCTGCTGCCAGGCTGTGATGGTGGAGCCAGACACCACCATGGGCATTTGCCCTGCCTGCCAGTACGCCTTCTGCACCCTCTGCAAACGGGGATACCACGGCCTGTCCCACTGCAAGGTCACAGCAGATGAGCTGCGAGGCCTGCGGGATGAGTATATATCTGCCAGTGCTGAGGGGAAGAAGTTCATGGAGCAGCGCTTTGGGAAGCGGGTCATCCAGCGTGCTGTGGAGGAATCCTTCAGCAGGGATTGGCTTAATGAGAACTGTAAAGGCTGCCCTCGCTGTGGCACTAATATACAGAAGGTTGATGGCTGCAACAAGATGACTTGCACCTCGTGTAAGCAGTACTTCTGCTGGCTGTGTCTGGGCCAGCTCACACGTGTCAACCCCTACAGCCACTTCAACAACCCCTCCTCGCCTTGCTTCAACCAGCTGTTCCAGGGTGTGGATATTGATGAAGATGATGCCTTTTGGAGTGATGAAGAGGACTGATGTGCAATACCTCCCATGCGTGCTTCATTTGTATGCACTTTAACCGCCCATGGATTTAGCCAATACAATTTCTCACCATCATTGATCAGGCATTTACTTACCCAAAATACATCAGTCATTTCTGATGGTTGAATGGCTAGCGGAGAGCAATTCCAGTTAGAAGTAGGCACATTACCTTACTCCAAACAGCAGTCAAATACTCAGGGCCAGTATTTTTCTGAAAGAATACTTGTGAAGAGAGTGTGAGCGAGTGTACCAAAAACGAATGGGTTACAGTGTGTTTAGATGATTTGAACAGATAACGTTGGTATGTTTTATCAATCTCGATATGAAAAGGAAATTCAGGGATCCGGGGGTGAAATCTTTCAAtcaagaacagaggacaacatttTGGGATAATGTTTGTACAATTTAATGTCTGTCCTTTAGAACCACTTTAATCATGAGTTAACTCTCTGTATACCCGGATACCATCCAAACCATGAGCTCACAgcttgatgtaaaaaaaaaaaaaagggtgaATAAAGCTTTGCCAAATGTGACATTCATCCAATGGCCATCAAGACATGATTTTTAGACACACTATTGTCcttttttgtatgtttttgttcCTTTTTCACCAAAAGGTACACTTTATTTATCATGTAACATGATTTGTTTGAATGGGACACACTcaggaggaggctggtgggaggggtTATAGGAttatgggctcattgtaatggctggaatggaattaatacAACATGGGTTGAtacatggtttccatatgtttgatacaattccatttactccattccagctattacaaTGTGCCCGTCCTCCTATTGCTCCTCCCGCCAGCCTCCTCTGACGCACACTGTTGATTAGGTTAAATATGGCATTGTTTCAGTACAAAAGATATGTCTGTAACCACCCTGGCATTTGCTAGTTACTACCTACTCACATTATGATCTTCATTGAAACTTTTCAGAAAGTGAGGCTAATTTGGAAATGGACATCAATGTAAATCACATTCAAAATACATGTCCTGCTCTTAAAGCAGTTATATTGTGCTTTCACTTTTATCTGTTAATGTTGAAGGGGGACAGTCTTTGATATTTGCAGTAGTCCTGAATTTAAAAAGTGTTGTAATAACCATAAACATACATAAATAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K11971 RNF14, ARA54; E3 ubiquitin-protein ligase RNF14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1235760 lncRNA upstream 292309 52544128 ~ 52544369 (+) True G1086161
TU1235751 lncRNA upstream 298648 52537802 ~ 52538030 (+) True G1086152
TU1235746 lncRNA upstream 300068 52536379 ~ 52536610 (+) True G1086147
TU1235710 lncRNA upstream 322637 52513416 ~ 52514041 (+) True G1086113
TU1235709 lncRNA upstream 323611 52512867 ~ 52513067 (+) True G1086112
TU1235987 lncRNA downstream 5301 52848026 ~ 52848279 (+) True G1086381
TU1235996 lncRNA downstream 27337 52870062 ~ 52870307 (+) True G1086390
TU1236006 lncRNA downstream 36818 52879543 ~ 52879750 (+) True G1086400
TU1236012 lncRNA downstream 42470 52885195 ~ 52885522 (+) True G1086404
TU1236018 lncRNA downstream 51844 52894569 ~ 52894887 (+) True G1086409
XM_021624134.2 mRNA upstream 14881 52804227 ~ 52821797 (+) True LOC110537762
XM_021624119.2 mRNA upstream 604450 52164071 ~ 52232228 (+) False LOC110537755
XM_021624121.2 mRNA upstream 604450 52164072 ~ 52232228 (+) False LOC110537755
XM_021624120.2 mRNA upstream 604450 52164073 ~ 52232228 (+) True LOC110537755
XM_021624114.2 mRNA upstream 712278 52088534 ~ 52124400 (+) False LOC110537753
XM_021624136.2 mRNA downstream 394 52843119 ~ 52851325 (+) True endou2
XM_021624137.2 mRNA downstream 8926 52851651 ~ 52861272 (+) True LOC110537765
XM_036937776.1 mRNA downstream 162104 53004829 ~ 53132925 (+) False LOC110537768
XM_036937777.1 mRNA downstream 162562 53005287 ~ 53132925 (+) False LOC110537768
XM_036937778.1 mRNA downstream 162562 53005287 ~ 53132925 (+) True LOC110537768
TU1235839 other upstream 179183 52649604 ~ 52657495 (+) True G1086237
TU1231639 other upstream 3155874 49679023 ~ 49680804 (+) True G1082266
TU1231371 other upstream 3536331 49291405 ~ 49300347 (+) True LOC110537713
TU1231373 other upstream 3545409 49277103 ~ 49291269 (+) False LOC110537713
TU1237606 other downstream 1266965 54109690 ~ 54148962 (+) True G1087914
TU1237658 other downstream 1431581 54274306 ~ 54280721 (+) True LOC110538908
TU1241153 other downstream 3882882 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 3909693 56752418 ~ 56752947 (+) True G1091235
TU1241421 other downstream 4273100 57115825 ~ 57117927 (+) True LOC110537831

Expression Profile