RNA id: XM_021624137.2


Basic Information

Item Value
RNA id XM_021624137.2
length 1458
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110537765
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 52851651 ~ 52861272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTGACGTAACAAGCTcgcagagaaagaggggagggactTGAGCAGACAGCGTCCCAATAGTTTATGTTTCCGTTATACTTTCTGTATTGAATACATTGACAATCGCTTGTTTAAATTAAAATATTTGAGTCTGTTCATATTAGGATGGCTGAGCCGTGTGCTAGATATCAGCAGCTGCCCAATGAAGAGGAGCCAGAGGAGGCTCTCCAGGTGGCAGCTGATGCCCCACCCCCTTACAGCAGCATTGCAGAAGAAAATGCAGCTTATTTTGACTACAAAGAAAATGGGGGTTTCCCCAATCCACCATCATACAACGTGGCCACAACGCTCCCTTCCTATGACGAGGCGGAGAGAACCAAGGCTGAAGCCCTTGTTCCCTTGGTGGCTGGAAGGGATGAAGACTTTGTAGCCAGGGATGACTTTGAGGATGCAGACCAGCTGCGGATAGGGAACGATGGCATTTTCATGTTGACCTTTTTTATGGCATTCCTTTTCAACTGGATCGGCTTCTTCCTGTCCTTCTGTCTGACCACGTCGGCAGCAGGCCGCTACGGGGCCATCTCTGGCTTCGGCCTGTCACTCATCAAGTGGATCCTCATTGTCCGGTTCTCCACCTATTTCCCTGGGTACTTTGATGGGCAGTACTGGCTGTGGTGGGTGTTCCTGGTATTGGGATTCTTGCTCTTCCTCAGAGGATTCATCAACTACGCCAAGATCCGTAAAATGGCAGACTCCTTTTCTAGTCTCGCGCGAACCAGAGTCCTTTTCATCTACTAAAAGGGGAAATCTGAACTCTTCTTTAGAAAATTTCGCTATCTGGCCTCAACTCCATCACGAAAAACAGAGAGGAAACACCTCTTGTTTTGCTGCTGATAAATTGGACAAAATCATTTCTGTCTCTTGATGTAAACTAGTGGATGTTGACAATTCTGTAACTATTCAATCATTAGTGGTTTATTTCAAGTGCTGTTTGGAATCAAGTCTGTGACGTATAAATAATGgttagactaacctgtacccccccgcacattgcctcggtaccggtaccccctgtatatatcctcagtatagttattttattgttttatttttgtattattattttttttactttagtttatttagtaaatattttcttaactgcgttaagggcttgtaagtaagcatttcacggtacggtcgacacctgttgtatttggcgcatgtgacaaataaaatttgatttatatCATTTGTATTATCTGTTTAACAATGGCATGTACTGTTCCTGTTAAACAATAGGGGGCAGTCTTTGTCTTTTTCTCTGTCCTCTTTCAAAGTGTTTGATATGGAGACCGCTCGGCTCTATGCTGACCCTGTGGAACTACCCATAGAGTTATGTCTGTGAATAGGAGCATTGAGTGAAATCTATTGATGTATATGATAATGAAATTAAAGTTAGTCTTTTCAAGATGTA

Function

GO:

id name namespace
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1235987 lncRNA upstream 3372 52848026 ~ 52848279 (+) True G1086381
TU1235760 lncRNA upstream 307282 52544128 ~ 52544369 (+) True G1086161
TU1235751 lncRNA upstream 313621 52537802 ~ 52538030 (+) True G1086152
TU1235746 lncRNA upstream 315041 52536379 ~ 52536610 (+) True G1086147
TU1235710 lncRNA upstream 337610 52513416 ~ 52514041 (+) True G1086113
TU1235996 lncRNA downstream 8790 52870062 ~ 52870307 (+) True G1086390
TU1236006 lncRNA downstream 18271 52879543 ~ 52879750 (+) True G1086400
TU1236012 lncRNA downstream 23923 52885195 ~ 52885522 (+) True G1086404
TU1236018 lncRNA downstream 33297 52894569 ~ 52894887 (+) True G1086409
TU1236021 lncRNA downstream 38072 52899344 ~ 52899557 (+) True G1086412
XM_021624136.2 mRNA upstream 326 52843119 ~ 52851325 (+) True endou2
XM_021624135.2 mRNA upstream 8926 52836678 ~ 52842725 (+) True LOC110537763
XM_021624134.2 mRNA upstream 29854 52804227 ~ 52821797 (+) True LOC110537762
XM_021624119.2 mRNA upstream 619423 52164071 ~ 52232228 (+) False LOC110537755
XM_036937776.1 mRNA downstream 143557 53004829 ~ 53132925 (+) False LOC110537768
XM_036937777.1 mRNA downstream 144015 53005287 ~ 53132925 (+) False LOC110537768
XM_036937778.1 mRNA downstream 144015 53005287 ~ 53132925 (+) True LOC110537768
XM_021624146.2 mRNA downstream 468909 53330181 ~ 53419845 (+) True LOC110537771
XM_036937786.1 mRNA downstream 801253 53662525 ~ 53681131 (+) False LOC110537774
TU1235839 other upstream 194156 52649604 ~ 52657495 (+) True G1086237
TU1231639 other upstream 3170847 49679023 ~ 49680804 (+) True G1082266
TU1231371 other upstream 3551304 49291405 ~ 49300347 (+) True LOC110537713
TU1231373 other upstream 3560382 49277103 ~ 49291269 (+) False LOC110537713
TU1237606 other downstream 1248418 54109690 ~ 54148962 (+) True G1087914
TU1237658 other downstream 1413034 54274306 ~ 54280721 (+) True LOC110538908
TU1241153 other downstream 3864335 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 3891146 56752418 ~ 56752947 (+) True G1091235
TU1241421 other downstream 4254553 57115825 ~ 57117927 (+) True LOC110537831

Expression Profile