G1086963


Basic Information

Item Value
gene id G1086963
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 53388857 ~ 53436842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1236604
atgttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcagattttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacattttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaagaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtc

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1236604 True 586 lncRNA 0.44 2 53388857 53436842

Neighbor

gene id symbol gene type direction distance location
LOC110537768 LOC106567493 coding upstream 255932 53004829 ~ 53132925 (+)
LOC110537765 LOC106567495 coding upstream 527585 52851651 ~ 52861272 (+)
endou2 LOC106567496 coding upstream 537532 52843119 ~ 52851325 (+)
LOC110537763 rnf14 coding upstream 546132 52836678 ~ 52842725 (+)
LOC110537762 LOC106567497 coding upstream 567060 52804227 ~ 52821797 (+)
LOC110537774 NA coding downstream 225683 53662525 ~ 53681131 (+)
LOC110537776 LOC106567605 coding downstream 253462 53690304 ~ 53692630 (+)
LOC100301661 LOC106567454 coding downstream 364820 53801662 ~ 53804908 (+)
LOC110538908 LOC106603872 coding downstream 816877 54253719 ~ 54283905 (+)
ppp2r2bb LOC106567445 coding downstream 922431 54359273 ~ 54460602 (+)
G1086881 NA non-coding upstream 97548 53290715 ~ 53291309 (+)
G1086710 NA non-coding upstream 202839 53139050 ~ 53186018 (+)
G1086705 NA non-coding upstream 386627 53001922 ~ 53002230 (+)
G1086704 NA non-coding upstream 387023 53001524 ~ 53001834 (+)
G1086649 NA non-coding upstream 422510 52966086 ~ 52966347 (+)
G1087247 NA non-coding downstream 12092 53448934 ~ 53449162 (+)
G1087248 NA non-coding downstream 13829 53450671 ~ 53450937 (+)
G1087269 NA non-coding downstream 28489 53465331 ~ 53465530 (+)
G1087286 NA non-coding downstream 37875 53474717 ~ 53474935 (+)
G1087297 NA non-coding downstream 44699 53481541 ~ 53482014 (+)
G1086237 LOC106567502 other upstream 731362 52649604 ~ 52657495 (+)
G1082266 NA other upstream 3708053 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 4088510 49262142 ~ 49300347 (+)
G1081353 NA other upstream 4641358 48746955 ~ 48747499 (+)
G1077322 NA other upstream 7380248 46004151 ~ 46008609 (+)
G1087914 NA other downstream 672848 54109690 ~ 54148962 (+)
G1091217 NA other downstream 3288765 56725607 ~ 56726003 (+)
G1091235 NA other downstream 3315576 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 3678983 57112902 ~ 57118165 (+)

Expression


Co-expression Network