RNA id: TU1237708


Basic Information

Item Value
RNA id TU1237708
length 2012
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1088014
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 54307795 ~ 54310437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCACATTCTCTTGGAATTAGAAAACCTAGTCCTTCAAATTGAGAAGATCGACAAGTTGCAGCAGCAAAGAGAGATGCTCGAGCTAAAAGCATTCTCTCTAAAAGCTGCGCGTCTCATTTCGTCTGGGCTGAGATCGTAACAGGTTAAGACTACAATTGCAAGTACTCAATTGAGAATCCTCATCCATACATTTTCTACCAATCTTCCCCATGACAGTGCAATGGAGCagctttgtgtcaagaactgaggCTGAGGGCACAAAGAAACCATAACGATATCCATGATATTCAACCACTTACTTTCAGTACGCCTAAAAAACTCTACCGTCTTCACAAAAAACAGAGGAACCCTTCCTTATCTTATGCAGAGTCACACTCCAGAAATGTATCTCTCTCAAATGAAATACCTGCACACCAACAGAAAAAGGTCGAGGCAAATATTACAAAAATATTTTCTTTGTCACCCCCTCTCCAAAGTTTCTCTGAATGTGAGGATAGACCTTAGAAATGTGTCATGCTTATTAAAACGTATCAATTTGAAAAAGTGGCAATTCATAATAGATAGATATACGTGTACTGTATGCATGAATGGACAGTACTGTAAATACACAACATAAATCACGTCATGTCAATGATGTATGTGTATCCATCTCACCTACATAAATGATACAAGTTATATACCTTTTGGTTATTTGTGATTGACGTTTTGACaggcaaaataaaataaaaaaaatcatccaAATTGCGCTCCATCCCTTTTCTACTTTGTGCCAAAGCACAATAAAAAGAGCTGGGAGTAGTAACTTCAGGAATCTATCAAAATGTTTCcaagtaatctacttgagaagcCAACTGACAGAGCAAGCCTTTTAGAAAATGTTAATGAATGCTTCTTTCAGGACATAATTGGACCCAAGCGAATTTCACAGTTCAATGAAAATCCCTGACCCTACCACATTTCCTACATTCAATACGGTGTCAGGTAAGCTGTGCAAAACCTTACTTTATCTGGCTAGTCACCGTTTTTGTTGCATGTGTCTTtggtacaaaaaaaaaacgaatcaaAATATAGTGTGCAAATATTTTGAAATTCTAGacgaattttttttttttttaaaccctcCCATTCCCAAAGTCCAAGTACCGATAACCAAAGTAAATGTTTGTCAGAGCCATCTTATAATACAATGCACAGACTCTGTGGCATATATCTACATGTTCCATGTTCATATGTACATTCAGAATAATTTTAAAGAGCAGAAATACATTACAAACCCACACCGTGACGTTCCCTGCACCATGTTCTGCTCTCCCTCATTGTAAAATGGTCCACTACCCTTCAACCTCTGGGAGTTTTTGTAATCATCTCACTTTAAATACAAGGCACAATGAATAGTACTCTGATCAAATACAAATACGAACACCCCAAACTAAGGAATTCTGAACTTTTAGCGCTCTCATCCCTACTTCGCAAGAAGCCAATGGCATTTTCATTTGAAGTCGTTTGAACGCTACAGGAAATGGCTACAGCAAGAACTGATGATCATTCTGTTTTGCTTCACTTCTCAACATAAAACATTTCAGGAGTTATCGTTTCATATATTGGCTTTGAATTCGCAAACACTGTGGCTCGTGAAGGTCACTAGCCACTTGCAACAAATGGCAAGTAACAGACTACTAAGTGCAGAGATAGCTACTAGTTTCATTTCTGTACATGCGCATTGTGTGAATACATACATGTGAAGCTATGGTATATGTATGTCTTCCCACTCAGCATTGGGAATGTGTTTCCGGATGGAATGGACATGCAGAGGGTGTGCCCGTTACAGTGTGGGACAAGAATGGTGCGGGATGGCTTGGAGTGTGCCATCACCAGGCTTCTCTACAGGGCCTGTCTACACTCTAGATGTGGGTACACGCAGCCCGACCAGACCTCCGGTGGGATCCCCCTTGCCAGTGTTCTCCAGGATCTGGTTCACAAAGTCTGAAGTCTCCCCGGCAACTGGGGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1237656 lncRNA upstream 23890 54253853 ~ 54283905 (+) False LOC110538908
TU1237679 lncRNA upstream 68462 54239100 ~ 54239333 (+) True G1087985
TU1237661 lncRNA upstream 105234 54202310 ~ 54202561 (+) True G1087967
TU1237654 lncRNA upstream 112886 54194641 ~ 54194909 (+) True G1087961
TU1237653 lncRNA upstream 113488 54194102 ~ 54194307 (+) True G1087960
TU1237710 lncRNA downstream 31785 54342222 ~ 54343510 (+) True G1088016
TU1237842 lncRNA downstream 191716 54502153 ~ 54502437 (+) True G1088143
TU1237858 lncRNA downstream 206864 54517301 ~ 54542634 (+) True G1088152
TU1237924 lncRNA downstream 371544 54681981 ~ 54682955 (+) True G1088217
TU1238625 lncRNA downstream 527764 54838201 ~ 54841638 (+) True G1088877
XM_036939510.1 mRNA upstream 26838 54253719 ~ 54280957 (+) False LOC110538908
XM_021624157.2 mRNA upstream 502887 53801662 ~ 53804908 (+) True LOC100301661
XM_021624154.2 mRNA upstream 615165 53690304 ~ 53692630 (+) True LOC110537776
XM_036937787.1 mRNA upstream 626664 53662526 ~ 53681131 (+) False LOC110537774
XM_036937799.1 mRNA downstream 48836 54359273 ~ 54460602 (+) False ppp2r2bb
XM_036937801.1 mRNA downstream 94353 54404790 ~ 54460602 (+) False ppp2r2bb
XM_036937802.1 mRNA downstream 129449 54439886 ~ 54460602 (+) True ppp2r2bb
XM_021624177.2 mRNA downstream 569236 54879673 ~ 54888634 (+) False LOC110537791
XR_005035008.1 mRNA downstream 569236 54879673 ~ 54888634 (+) False LOC110537791
TU1237658 other upstream 27074 54274306 ~ 54280721 (+) True LOC110538908
TU1237606 other upstream 158833 54109690 ~ 54148962 (+) True G1087914
TU1235839 other upstream 1650300 52649604 ~ 52657495 (+) True G1086237
TU1231639 other upstream 4626991 49679023 ~ 49680804 (+) True G1082266
TU1231371 other upstream 5007448 49291405 ~ 49300347 (+) True LOC110537713
TU1241153 other downstream 2415170 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 2441981 56752418 ~ 56752947 (+) True G1091235
TU1241421 other downstream 2805388 57115825 ~ 57117927 (+) True LOC110537831
TU1241907 other downstream 3589034 57899471 ~ 57914832 (+) True LOC110537841
TU1241903 other downstream 3905718 58216155 ~ 58222190 (+) False LOC118937686

Expression Profile