G1088217


Basic Information

Item Value
gene id G1088217
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 54681981 ~ 54682955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1237924
GGGAACTTTAATTAAATATTGTGAAAGTTGAAAAGTTATTTTACAGTTCAAAGTtaatccaaaaaaaaaaaaaaagaaggagaTCATCTTTACAGTAGTTTCATTTTCTCTTTTCCTTGTCCATCAATATATAACTGCTCTGTGTGTCCAGTCAAAGACAAGGCTTGgtaagagaaatggagagatgggTTCAAAAGGGTGACAATAGGATTCAGAGAACAATTTCATTCATTTCGTTGACCAGGTGGCCACCTCCCTGACAGGGATGGCTCTATACTCTTGGCTGGGCGGTGACACAGTAAACCTCAAACGTATCTGTCCCTGTACCCGAAAGACAGGAGAACTGAGTCACAATGCATACAAGCTGAACtcatcattacacaagtgcattTTACAAGAGACTCCCTCATCCTCAGAATCCTCAGTTTAAATTCTCCCCCTCCTACAAAGtcacttaaaaaaaatatccgTCAGCAATTAAATTAAAAAGCCACGTTCTCTTTCAGAGGACTGTTAGcgcgaacacacacacgcgcacacgcacgcacgcacacacacacaaaagactaCAAAGAGTGGTCATATGACCCATGTCAGAGATAAACAGGTGGCTCAATTTGTATAtaaagggaggggaagagaaaagggggagagtcAGAAGAGGGCAGTAGCAATTGTCGAAGCAAGGGTGTAAAATGACTTGTGTGTACAGATTATTGTGCTGTCATTTAAAACTGTTCATCATCAGATCTGTTGTTGTACCATAACCTTTCTCAAACAGAATCAAACAGTAGATAGAATATGGCTTCACCATCAACCCACCCCTAGCTGTGTATATGAGAGAGGAATATGAAGGGGAGGCTTGGCTTCAAATGAGTATTGCAGTgcacctcactcctctcctcctctcctccaccactcCTTACCCCTCCAGCTGCTCAACACATTAAATATt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1237924 True 955 lncRNA 0.42 2 54681981 54682955

Neighbor

gene id symbol gene type direction distance location
ppp2r2bb LOC106567445 coding upstream 221379 54359273 ~ 54460602 (+)
LOC110538908 LOC106603872 coding upstream 401024 54253719 ~ 54283905 (+)
LOC100301661 LOC106567454 coding upstream 877073 53801662 ~ 53804908 (+)
LOC110537776 LOC106567605 coding upstream 989351 53690304 ~ 53692630 (+)
LOC110537774 NA coding upstream 1000850 53662525 ~ 53681131 (+)
LOC110537791 LOC106567438 coding downstream 196718 54879673 ~ 54888634 (+)
LOC100136153 LOC100136153 coding downstream 364205 55047160 ~ 55052488 (+)
LOC110537795 ablim3 coding downstream 382166 55065121 ~ 55209632 (+)
LOC110537794 afap1l1 coding downstream 526775 55209730 ~ 55247859 (+)
LOC110537796 LOC106567431 coding downstream 574479 55257434 ~ 55270161 (+)
G1088152 NA non-coding upstream 139347 54517301 ~ 54542634 (+)
G1088143 NA non-coding upstream 179544 54502153 ~ 54502437 (+)
G1088016 pcyox1l non-coding upstream 338471 54342222 ~ 54343510 (+)
G1088015 pcyox1l non-coding upstream 340140 54302300 ~ 54341841 (+)
G1088014 NA non-coding upstream 371544 54307795 ~ 54310437 (+)
G1088877 NA non-coding downstream 155246 54838201 ~ 54841638 (+)
G1088896 NA non-coding downstream 184976 54867931 ~ 54889570 (+)
G1088883 NA non-coding downstream 207219 54890174 ~ 54918996 (+)
G1088992 NA non-coding downstream 309809 54992764 ~ 55001431 (+)
G1089011 NA non-coding downstream 341853 55024808 ~ 55025073 (+)
G1087914 NA other upstream 533019 54109690 ~ 54148962 (+)
G1086237 LOC106567502 other upstream 2024486 52649604 ~ 52657495 (+)
G1082266 NA other upstream 5001177 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 5381634 49262142 ~ 49300347 (+)
G1091217 NA other downstream 2042652 56725607 ~ 56726003 (+)
G1091235 NA other downstream 2069463 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 2432870 57112902 ~ 57118165 (+)
LOC110537841 mtmr4 other downstream 3216516 57893341 ~ 58071571 (+)
LOC118937686 NA other downstream 3533200 58216142 ~ 58222215 (+)

Expression


Co-expression Network