G1088883


Basic Information

Item Value
gene id G1088883
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 54890174 ~ 54918996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1238646
TGTTTTCAGTTGGATAGTTGGAAGAATGGATATGGTTCTGAACATGGAATCAAACCCATTTGTATCTGTTACTAGTATTCTCTTTAAGAGGCAATTGAACAGTCTTTGACAGTATTTAGGTTAATTCAATATTTGCCAACATTTTTGCTTTATTGGCTCTAACGCTAGAGCATCAATGCTCTCACGTCATCCCGCAAAGTTATGCAATAATCTAAAGATCAACTGCTATCAGAGGATATGAACACGTCTGTTTACTCTGTTATTTTTCTGTTTTGGATTGtcaaatatttattttacagACCAACTTCTTTGTTTTCTTGTAAAGGACATGTTTTGCCGCCTTCATGTCAGGTGGCAAAGGTCAATTTAAATAAGCATTTCAGTTGTTAAATTAAAGTACtctcacagagtttctaaacccagaggcgcaacatcgcgAGCTTCCGGAAAACGCTTGCGAAACAGACCAAACAGACTAGGTGTTTGAGACGTCAATGGGAGAAGTGAAATAATTCTTCCTTAGCGGTACATGTTTTCtcaatctaaaggcacaacctagattcgagccaatgtctTAGGTAGTTGAACATGCTATTACTCCAACCTTGTGACAAACTGACACATTTTCAATTTTCGTCCAAAACTTTAtatcgaaggagtgcctttgatttgatggCCTTTAGACCCGATGACGTGTTTCTAAACGAGCTTAGCTAGTCAACGTCGCCGTGACATCTTCTACGGATGTGATTGGGGATTTCTGTTGGAGAAGCTGTTTTAGCCTGTCTTCATACTGGACTGTCTTTGGTACTATCATTTACCAAGCTGTGTGCACTCTGTCTACATGCATCTTAGGCACTGAATACACACTTGGATAACCGACATTCAGTATGTATGGTAACTCATGTCTGTTGCTGAATACACACTTGGATAACCGACATTCAGTATGTATGGTAACTCATGTCTGTTGCTGAATACACACTTGGATAACCAACATTCAGTATGTATGGTAACTCATGTCTGTTGCTGAAGCAGCACTTGTCAAACTATTATTTGTTTAGTTCTCAGCTTGTCATATTTGTTACCTCCAGTTAAGTTTGCTTCCCAGTCACATGGTTTGTAAAAGATGAGGAAACTGTGAGATGTCATTTGCAGACTGTTGTACACTCCCCTATGTATATATTTGGACAGTGAAACTAAAATGTttcatttggctctatactccagaatTTTGGATTTAAGATCATGTTTTATATGATGCAACAGTCCGTAATGTCACCTTTTTTATTTTGTGGTATTTTTATACATCTGTTTTTActttttagaaatgaaagcactttatgtatctagccCTCTACCCCGCCCCCCACCCacccatttgaaggtgtcataagtaaggacaaattcacttgtgtagtattttggtcccatattcctagcacgcgatgactacatcaagcttgtgactctacaaacctGTTGGATGCTTTTGGTTGTTTTGGTTATGTTGTGCACAATAGAAATGAATCAAATTCATCCAAAACGTCTGTACAgtcaagcttgatgtagtcatggCACGTTAGGAATGTAGACCAAATACATTTGACTATTTAATAcactaagtgaatttgtccaaatacttccAATTGGGGGACTAGATGCATAAAGGGCATTCATTCCTAAACGGTAAAACAGAAAACACCttaaaataaaaggtgacattctatgCTGTCACCTCATGTAAAACATTTGATCTGAAATACAAAATGCTTGAGTATAGTGCCAAATTAGAAGTTTAACTTTCACTGTCCAAGTACGTAGGGGAGTGTCAGACAACGTGAACATGTTTTTTAACAAGCGGACACCGGATTCCTGTTGTGAACATATCCCGACTGTAAATAAAAGATGACACTTTTTAGAAAATAAACTTTTGTAGTCAGATTTTTACACCCAGTCGTCTCGTCAGTTTTTAATTAGTGTACCCATTGTAAACACTCACCTGTTCCAAGTTTCTTAAAGTCATCTAAAAATGATTTGCTTTGTTGATTCCGATGAAAACAAATGAACATGAGCGTGAATCAGTGTGCAGTAGCTTTTTATTTTTGCGTCTATTTAATCATTTAAGCAAACATCTTCGTGCTACAGCAATGAAAACCGTCTTGGAAAAGAGATGAGTAACATAAATAAATGGTGTAATTACATTTCagaattttttacaaataaataaataaaaatcccaaCACATTGTATACTAGCTACATTTCATAACATGTCTTCAGTATAATGTCAAATATTTGTTTCTGTACAATGACCAGCCTATTCCATATTTGGATGTTTTGGTTGAAGCTGAGTGATGGTATGTTGTCGGTCTTCATCTGGGTTTCCTTACCTTTttacaatagagacagaaatTAGACATTTTTCTACAAATGACAattgaattaaaaaatatatgtaagtATTGGAATGTTTTTGATTTATGGGTGATAAGGAGCCATCAAACCTGTCAGTGTTTGTTAGGTTTATTCTTCACCCTGTTGTACAAAGACACACCAGTCACAAATCTTTCATCTTTGCACAGTTTAGTGCTGTTGATTTTTTTTACACTCTTAACTACTAATGAAGTTGTGTATTAGAGGGCAGGACACAGTGAAATAGTCTAGACTCACTCATAACGTGTCCACTGGCTCCATTGGGAGTCAACCAGGTCATCCTTTGCCCCGAGGCAGAAGCAATATTTTTTGTAGCTGGAACGAACAGTGAATTCTGTTGCATTTATGTTGGTTTCACTTATAAACACCTATCAAAGAGGAGAGATGGTACCATCACCTtatatttacatcatttagcagatgctcttatccagagcgacttagagCGACTTAactttaagtgccttgctcaagggaacatcaCACATTTCACCTAgtcagcgacctttcagttactggctcaacgctcataaccgctaggctacctgccgccctacctTAGACAGACCGGCCATGTATCACAGACTAGAGTGTAAATCAAGACATTGGGGATTCCATGGATAAAATGTGCGTGTACCTTTTCCTTCGAGTCACAGCTTGCCTCGTGTTGGACCACTTTGACTCGGAATGTGAGGGGGAAGTAAGGGCAGGGGCGGCTCCATGTCGCTGGGTACCCCCACTGAAATGTGTTCCCCTCCACCTTGGTGATGTCGATCTTGTCTGGTTTCACTGAGGAGGGAGGACCAGACAGAATCAATATTTCTGAAGGGTTGAATTGGATGAAGTGGGGGGCCGTGTGAATCCTATGATGTACTGAGCAACATACAGCAAGGATGAAAtgagatgtactgtatattaacttaTATATGATGTGACGTTGCTGTTTCCAGTGAATGAGTGTGGAGCACGTGAATCCTGGCCTTACTGTACCTATTTCTCGGATGTAGAAGGGTGTGATGGTGTAGTCCTCTAGGAGGTAGTTAGTCCTGAAGTATACAGTGAGTTTGATGCGGGACAACTCCTCAGCAAAGGGGCAACTATCCCGGTCCTGACAGGTCAGGCCTTCACCATCACTGTCTTCGGAGCAAGAGATGGTGCTAGATGAGGAACACAAATCTCCTGGTTAAACTTGGAGCCCTCTCTCTGAGAGAAGCCTCAGGTCCAAACATAACAACAAATCATAAGCTCTTCACAGGGAGTCAATGAAGAGAGCATCTGTGCTGCGTTTCAACTTCATGCGACAAGATCAAACGATGTGAACACAAGTACATGAAAGCCGACTATTGTTTCTATTTACTATCCACTGCGTGTGTTTGAAGACTTACCGTCCTACTTGGACAAAAACAACAGCTGCTGACATCCGATATTCGGTCTTCTTCCAAGAGCAATGAAATATTCCACTATAATTTTTCGCCAAACATCTGATGTACTCTGTGTAAAAAGGTTAACCCAATAACAAAAATGATTATCtgattctgtctttctctctctctctctctctcacacacacacacacacacacacacacaccatctgtgTCATGTGACTTCTCCAGGACGCGTCTCGTTCTGTTGGGTGATGGTATGTCCTGCACCAACACCAGCGTGTGGTTGAGGTAGTCTCCGGCAGCGTTGTGGCAGCTGTAGTTCCCTCCCATCATCTCCACCACTTCCACATTTATCTGGTTCCCTTTGTTTTCTAGACGCTCCTTGCCATTCCTCCAGATCACCTCTGTGTCCTGGTAGTCCCCACATCGCAGAGGGACCTGCGTCTCAGTGAAGACCTTTCGATCCACCATGACGACAAGTACTGGGAACCACATGACCACCACTGTTTTAGTATAGCCTCCATGTTAAAACACCTTTTATACAAGGTGTCTCCGAAATATGAATATTATGACAGCGGAAGTTATATAATCAGAAGTAGATAGTGTATCTGTAAAGAGAAGTAGACATAGGTAGAGATAAACAGATAAACAGTCACCATTTGGCATGAGGGTCACAATGGTCTCATGTTGGCTGCTCGATGCCATATGTAGGATGAGATACAGGATGTTGAGTAGTAACACGTTCATCTGGCAGAAAGAAAATCAAGAGCACTTTCAAGTTCTCTATTGATATTTCAAGTTCTCTATTGTCTATTGATATCTATTGGATCGAAATGCTAAGGACGTTCTCCTGAACCAGAAAAAAAGTCAGTATACTCCAATCAATAAGCTATACTGTAGTAGTATGTGCATATCTTACCTTGATAATGAGATACAAGCAGAGTGTGAGCCTGGCTGGAGTGTCGTGCTGACATGTGGACCCAGCCAGTATTTATATATCAGTGGAACAAGGAGTAAAGACAGACACGCTCAAAATAAAAAAGTCCAGCCTGTCAGGTTAGAGGAACTGACCTATTGGTATTTATTTAAATGGGATTTGAGAATGTGGTCAGTTGAAAGGTCCAATGGAGCTGTTTATATCTCTATATCAAATCACTTCTGGGCaataattaagtaccttactgtgatcgttttcaattaaaatggtcaaaaagaaacaaaaatagcatcCCGGCAAAGAGCTTTTTCTCAAGCAATCATTTTGAAAGGACTGTCTGGGAGCAGGGGCGTCATGCACCCgcaaaatctgagggggcacaaaaTGCATGAGGATGGCTGGAGGGTGGTCCGTAGGGGGTAGGCCCCTCCGTCCGGAAGTTGGAGAATTTTGCATTTCTCAAACACCTGGAACAACtttttttcctgcaatctagagccataatcattatgattaattctatgtaaaaaaaaaaaaaagtttatttttctgcatatctaagcatacgTCTTGAGTTGTCTgtcctcctgactggtggttaTCTTTTAATgaaactaaatatgcttctctgtgTCTTATTTAGTAATctcttgcttttctaaagtctaccaatcTTGCCAGAaagcatgccagctaagatagttagacaagctatcCACTCGAATTTTCACATTTTACAAACTCAtattgtggaaatatatataaaacacgttcatgtttttgactgcactgggcctttaattaaGAACTCGACTACTGAATGGATGGGGGCTCTATTTTTGCAACTTCTGTGCTATGGTGACTGACGTCACTACCTGAGAGGGATGTAGCAGTGATGCAATCCATTCATCTGCCACGAGAGCGAATGACCAGGCATCTCAAGATCCCATACTGGTTTCTCTTTTTTGCAGGGGCATGACTTTGTTCTAACTTTGTGTGGGCTCCATCCTGGCTGTGCTATCATATGACAAGTCAGGTTTGCACCCCGACTTTAGACGACATTTGTGTGAAGTGACGTGAGGACAGGAATCCTGGACGTGCAGTAGGAGGCTGAGACTAAAGATGACACAGCGATGAAGGGGAACTGGAAATAGTTGGGCTGAGGTGGGAATCACGTAACACTGCCTACCTAGTATCTAACTACGCTCGAGACGTGTCATCAAGGAACTGGAACAGGGAACTGTGTCTGAGGTTCAAGCATAGCGCCTCAAGTTCATTGTGATGTAAAACATATGAAAGTTTCTGAGGGTTCCTGAATGTGTACCTAATAGCTATGTACTGAatcaaaaaagaaacatcctctcactgtcaactgcatttattttcagcaaacttaacatatgtaaatatttgtatgaacataacaagattcaacaactgagacataaactgaacaacagaaatttaataatgtgtccctgaacaaagggggggggtccaaatcaaaagtaacagtcagtatctggtgtggccaccagctgtattatgtactgcagtgcatctcctcctcatggacagcaccagatttgacagttcttgctgtgagatgttaccccactcttccaccaaggcacctgcaggttcccggacatttctggggggaatgaccctagacctcaccctctgatccaacaggtcccagacatgctcaatgggattgagatccggactCTTCGCTAGccgtggcagaacactgacattcctgtcttgcagaaaatcatgcacagaacgagcagtatggctggtggcattgtcatgctggagggtcatgtcaggaagggtatcacatgagggaggaggatattttctctgtaatgcacagcattgagattgactgcaatgacaacaagctcagtccgatgatgctgtgacacaccgccccagaccatgacggaccctccacctccaaattgatcccgctccagagtacaggcctcagtgtaacgctcattccttcgacgataaacgtgaatctgaccatcacccctggtgagacaaaactgcaacttgtcagtgaagagcactttttggagggattgtgctttcttggtgtaacttgggcagttgttgttgccatcttatacttgtcccgcaggtgtgatgttcggatgtaccgatcatTCCCCCcaggtctgccactgcgaggacgatcagctgtctgtcctgtctccctgtagcgctgtcttaggcgtctcacagtatggacattgcaatttattgccctggccacatctgcagacctcatgcctccttgcagcatgcctaaggcacgctcacgcagatgagcagggaccctgggcatctttcttttagtgtttttcagagtcagtagaaagtcctctttagtgtcctaagttttcataattgtgaccttaattgcctaccgtctgtaagctgttagtgttttaacgaccgttccacaggtgcatgttcattaattatggttcaagcatgggaaacagtgtttaagcccttttacaatgaagatctgtgaaattattgggattttttacaaattatctttgaaagacagggtcctaaaaaagggacgtttctgtttttgctgagtttatctcAAATAAGCTAATGAAAGGTTTTCTTCATTTATACACTTCATATCATTGTGTAATTTGTTTTTGAATAGCTTATCCCCCCGATACTGTGCAAACCAATTCAGAGGCAAATGAACCTAATCAGAATGTATGTTTTTATGGTAAATGAAACTGTGATTGCCTTATGAAACTAGGGGGACAGAATCTCAATCTGTGTGCTCCTTTGACTCGGCCATGTGGGCTTCTTATGTCCGTACCGTTGGGATGCATGGTAGAGTTcattagcagcagcagcatcctCCCCCAGATAAGATGGCCTACTAATTAGCCTAGCGTTGGAATGTTGATtggttggccctgtccgggggt

Function

NR:

description
interleukin-12 p40b subunit, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1238646 True 7737 lncRNA 0.42 2 54890174 54918996

Neighbor

gene id symbol gene type direction distance location
LOC110537791 LOC106567438 coding upstream 1540 54879673 ~ 54888634 (+)
ppp2r2bb LOC106567445 coding upstream 429572 54359273 ~ 54460602 (+)
LOC110538908 LOC106603872 coding upstream 609217 54253719 ~ 54283905 (+)
LOC100301661 LOC106567454 coding upstream 1085266 53801662 ~ 53804908 (+)
LOC110537776 LOC106567605 coding upstream 1197544 53690304 ~ 53692630 (+)
LOC100136153 LOC100136153 coding downstream 128164 55047160 ~ 55052488 (+)
LOC110537795 ablim3 coding downstream 146125 55065121 ~ 55209632 (+)
LOC110537794 afap1l1 coding downstream 290734 55209730 ~ 55247859 (+)
LOC110537796 LOC106567431 coding downstream 338438 55257434 ~ 55270161 (+)
LOC110537797 nola2 coding downstream 362735 55281731 ~ 55285435 (+)
G1088896 NA non-coding upstream 604 54867931 ~ 54889570 (+)
G1088877 NA non-coding upstream 48536 54838201 ~ 54841638 (+)
G1088217 NA non-coding upstream 207219 54681981 ~ 54682955 (+)
G1088152 NA non-coding upstream 347540 54517301 ~ 54542634 (+)
G1088143 NA non-coding upstream 387737 54502153 ~ 54502437 (+)
G1088992 NA non-coding downstream 73768 54992764 ~ 55001431 (+)
G1089011 NA non-coding downstream 105812 55024808 ~ 55025073 (+)
G1089013 NA non-coding downstream 108668 55027664 ~ 55027888 (+)
G1089056 NA non-coding downstream 195198 55114194 ~ 55114513 (+)
G1088894 NA non-coding downstream 270754 55189750 ~ 55205645 (+)
G1087914 NA other upstream 741212 54109690 ~ 54148962 (+)
G1086237 LOC106567502 other upstream 2232679 52649604 ~ 52657495 (+)
G1082266 NA other upstream 5209370 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 5589827 49262142 ~ 49300347 (+)
G1091217 NA other downstream 1806611 56725607 ~ 56726003 (+)
G1091235 NA other downstream 1833422 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 2196829 57112902 ~ 57118165 (+)
LOC110537841 mtmr4 other downstream 2980475 57893341 ~ 58071571 (+)
LOC118937686 NA other downstream 3297159 58216142 ~ 58222215 (+)

Expression


Co-expression Network