G1087944 (LOC107598339)


Basic Information

Item Value
gene id G1087944
gene name LOC107598339
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 54158789 ~ 54164032 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1237636
GTCACAGTTAAGTTTTATTCATTCAACATTTCACATTACAAATATTTAAAAGTTATGCATACTGTTATAAATAGTTGGCTGCAAACAATTAAATAACATTAGATCTCTTTTTCATTTCACTAGCACTTTTACAGACCAACTCCTAGAAATATGGACATTTTGTATTACATAACTTAATTTGAAAGGAAAATACAAAAATAGTAACTTATAAAGTGAAATGACAATAAAAATTATGGTGATatcttaagtaaaaaaaaaaatattaataaatACAACCTTCCCATACACAGTTAAAAACTATTGACATTTTGCCATTAAGTAACATCATTAACAGACcaatatttaaatatttatttccTTCAGAAAATGTGAACCATATATTGTGGAGCACAATATAGCAATTAGTAAAAACTAGACACTAACATATTAAAAGCTTCACCTCAAAAATATAACAAAAATCTGATCAAAATTATAAAAAATTATACATTCCAATTAAAAATATACCAATAAACAGCTAAATACATTATTGACCTAATAATTACAATGCAACCAATCACAGTAGCTTGAAATAAACAAATTAAGCAAATGAGCACAAAacctttaaatgttttaaaaaataacttCAATTATTTATATTAGTACAAATAGTTTGatttctttttcttttcttttttacaaACACCAGCATGAAAAGGATTACAATAACAGTAGAAAATGACTGTGAAAAACATATTAACATCTTCTTTAAATGTCTGCAATTAAAAACGGCATTAAAGAATTACATTGCAAAGTCTTATTCTGGAAAAAAGTTCAAAAAAAGTATTGCACATAACAACTCGAAGTTAACTTGCAACATTTACCACATTCAAGTCTTAATGTTCCCCTTCCTCCAACTAGGTTGATTTGCCTCAACAGACAGTGGAGATGAGTTATCAAGTCTTTTTAACAGTGTCCTAAAAGATGCTCAAGTCTTGCActgctaaaatatattttagagttTTTTTCATTTTCTTATTTTCTTGTATATTTTTCTGTGCATCCTGCAGAGGTCTGAGTATGGGGAAGGCAAAGAGATGAACACATgggaggggagtgaggtgtgGGGGTGTCCTTAATAAATTAAAAGTTGTGAAACATCTGGTGCACTACAACAATTCATTTCAATAGCTAATTCATgtacttctttttttttatcatGCATGCTAAGGATTATAATAGGAGCTAGTTGGCAAGTTCAAGAATATACATTTTCCAATGTTAAAATATCTAAACACCAAACATCCATTCTTGTGATACGAGATTCAGCCTAATTATGAACCATCATTTGCATTCTCCTTATAATTGTTACATTCCAGCTATGGAGAGAGGAAACCAAAAACAATAGAAGTTACCATTTTCCAACTAGGGTAgccatttttttaaacattcattTTAAATGACAACGTTTTCTCACCATGCTGTTAAGATCAGATTTTTGTGAAACATTTAGTGTATGAGATCTAATACCTTAAGCAATACACTTTCATCATCCCTCTGCAGTTTTGAAGTCGCATCAACACAAGTGTGCACTTAGTTGTAAAGATTCCTCAGCACTGAAATGTATAATAAAAAGCATAATTGAAAATAATATTGAAATCACTCAACTTTTTTCTTTAAATTAAAATTTCCATATATGCAGATCTCTCAGTAACAAAAGTACAAAAGCTACCTTTCACAATGTGAAAAATTGAGGTATTGCAAAAAGGACTTTTCCCATTTGTGAAAAAATGTGCCTAAAATGACTGTTGAAAAAAATGTTTAGAAAAGTAGTGCATAATAAATGTTTATATGTGCATGACAAAATAATTTAGCTAGAAAACACAGTACCAAAAATCAGCAGGCCATGTATAAAATAATCTTTTTCTCATTAACAGCAAATTCTTCAAAAAGGGTTTTTAACTTCTAAAATGTTCACCCACCACACCCAAGCTAAATTCATGGTGCAGAACTGGTGCATTATCACACCATCAAGCCAACACAAGGATACGTATTTCACTAGTGTATTAAGTTATATTTTAGCACTTACTCCCTGACATATTTAACGCTAGTAGATTCAGATACTGTATgactatattaaccagaccaacTGTGAGTCTTTGTTTAGCTTTTTGTGTTACATTTCCAAACCTTTTGCAGATCTATCCAAGTTACACAACTGCCTAGCAAGAAGCTTCTCCATTTTGACCTTTGGAAATGAGCGGATTGACTGGTGAAAAGGCCTGGGTGCTTGTAAGCTCAATAAATCCAGTTGTTTTCACTAATGTTTTCCTGGATTTTGACTGCACTGTTATCTATTCAAGGCCAATCTTTGGTTTACTGGTGTCCATCTGGTCTTCTTAAGGAAAGGGTAGAAATGATATAAAAACGAGAATGAAAActcttaaaaaaaagaaaaaaaaaaagaaatgagcTAGTATTACTCACTACTGCACAGCCGTCTTTGCTTCCCTAAAGAGTCTAGGTATAAACTCTTTATTGCAGTCTTGAGTGAAAGAACTGCATGTGGGACGCACATAGTAGAGCACATTACATGGAGTATCTTCATTTATGCTTAAAACACTGGCTGAGTTAGCTCGGCTGGCACAGGAAAAGAGGTCTGCTGTTCTAGCTATATCAATGCCTCTAGGGGTAAATGTGTGTTGATGACAACCCCCAACTTTTCTAATTAATTTCTCTTTTCTTTTTAAGTGGGGTAAAAACAAAATAGGATTGTGGATAAAGGCTTGGGAGATTTGCACACCtgcattaataataataaatgaaaaaaaaacacaaaaaaaaacaggtctTTCTGCTCACATGCAGCCCCGATGAGAACTAGACCCTAGCCCCTCCTCCTCTCCGAGCTAGCAAgaccacagacacagagaggggggtTCACTTATTATCCCGACACCGGCCAGCACTCAGGGCCTCTGGGACCTGCAACGCCATACATTCCTCAATAAGATGCTCTGTTCATTCTTACTACAACCCTGGTTGGATTACAAAAATAAGGAAGTGACAAAGCAGTGTCTAGAAAAGTGTGCCGTTTCCCTTTGATTGTGGTCCTAAGGGAAAGGTGGAGACCAGCTTCTTTTCTTTAACTTATTCGGCACATTAGCAGCTAAGCTTGAGGTATTAGTTTTTGCATGTCAAAATGGAGATCAAACTCAAACGCCTGTTGTGAAATCAATCTTGTCAAGTAACATCAAATATTAGCATGGTCTTAAACATTATTTCAAACATTTGATCTGTAGTCGTTTCTTtttcaaaccaattgagattAAGCTTTGGTTAAACTACTGGGATTTTATACTGAATCATCTGCACTCTAAAGTAAATAAATAAGTGCACTCTTCTTTAGCGACACCTTTTATATTCACATTTGCTCTGAACTACAACTGAACATACTGCTTTAAAATTCATGGTCAATGACACGCCAAATTGGATAGCAGAGTGACAACTGAAAaccctttttttttctccaaatgtcTATCTGCACTAATAAAATATAAAACCAACTGAAGTAAAAGAAAATAATGGGATTTAAACATTTTCTTTTCCTTCCTTGACATATCGGGATATAATTCCAGTTTCTCATCTTTAAAATAAATATGAATTTaaaattaaactttttttttttcaaattagaGCTAAAAAGTAACCAGCAACTGAAAAGTGCATTTATTTGTACAATGATTTGCGACTCCGACTcccccctctgcctctgcctcttactctgtgtgtcagtcagtTCCAGCGGAAGGAGATGTGCCTAGGCCGGTCCCCTCCTTCCTTTACCAGTGGCTTGTGGAACTCCCGGCCGGCGCGTGAGTGAATGGCCGCCCAGCAGTATTCACAGTAATACTGAAGACAGGTGACATTGGCGCAGAAGAAGGGTTCCCTGACACTCATCACACAGCTGGTCGTCCAGGACGTATGGCTTCACTTCCaCCGTTTATCGATTTCTCCATGCTGCAGTTGGACAAAACGAGCGCTGATAGCAGCAATGTAGCTCTGCTGATTAGAGAAGGCGACCCGCCCAGCTCCCTTGGGGTACTTGAGCTCGGGGTCTGTGTCGATACCGGCGTAGCACACCCCTCCATACAGCCTGTCCATGATCATTGCTAGCTC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1237636 True 4155 lncRNA 0.35 3 54158789 54164032

Neighbor

gene id symbol gene type direction distance location
LOC100301661 LOC106567454 coding upstream 353881 53801662 ~ 53804908 (+)
LOC110537776 LOC106567605 coding upstream 466159 53690304 ~ 53692630 (+)
LOC110537774 NA coding upstream 477658 53662525 ~ 53681131 (+)
LOC110537771 LOC106567489 coding upstream 738944 53330181 ~ 53419845 (+)
LOC110537768 LOC106567493 coding upstream 1025864 53004829 ~ 53132925 (+)
LOC110538908 LOC106603872 coding downstream 89687 54253719 ~ 54283905 (+)
ppp2r2bb LOC106567445 coding downstream 195241 54359273 ~ 54460602 (+)
LOC110537791 LOC106567438 coding downstream 715641 54879673 ~ 54888634 (+)
LOC100136153 LOC100136153 coding downstream 883128 55047160 ~ 55052488 (+)
LOC110537795 ablim3 coding downstream 901089 55065121 ~ 55209632 (+)
G1087730 NA non-coding upstream 288574 53869766 ~ 53870215 (+)
G1087721 NA non-coding upstream 298953 53859634 ~ 53859836 (+)
G1087681 NA non-coding upstream 330176 53828413 ~ 53828613 (+)
G1087665 NA non-coding upstream 332587 53825999 ~ 53826202 (+)
G1087652 NA non-coding upstream 348366 53810199 ~ 53810423 (+)
G1087945 LOC106567449 non-coding downstream 1859 54165891 ~ 54182385 (+)
G1087954 NA non-coding downstream 22149 54186181 ~ 54186467 (+)
G1087960 NA non-coding downstream 30070 54194102 ~ 54194307 (+)
G1087961 NA non-coding downstream 30609 54194641 ~ 54194909 (+)
G1087967 NA non-coding downstream 38278 54202310 ~ 54202561 (+)
G1087914 NA other upstream 9827 54109690 ~ 54148962 (+)
G1086237 LOC106567502 other upstream 1501294 52649604 ~ 52657495 (+)
G1082266 NA other upstream 4477985 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 4858442 49262142 ~ 49300347 (+)
G1081353 NA other upstream 5411290 48746955 ~ 48747499 (+)
G1091217 NA other downstream 2561575 56725607 ~ 56726003 (+)
G1091235 NA other downstream 2588386 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 2951793 57112902 ~ 57118165 (+)
LOC110537841 mtmr4 other downstream 3735439 57893341 ~ 58071571 (+)

Expression


Co-expression Network