XLOC_029807


Basic Information

Item Value
gene id XLOC_029807
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 3169745 ~ 3171100 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061617
AAGAGGAAGACAACTAACACACACTGCTAAAACcactggaggaggaggagaagatgatgaagatgagccAACTGTGGGCTTGATCTACCAGTATGGATGGCACCGAGAGATAATATTAGGAGCGgAGGAGTCCGAGATGTCTGCTTTTATCAGGAAGTCCAGAAACATCAGGACAAAAGGACGTACAGTGCAGTCATCCATAAAGTAGAAAGCACTACTAAACCCCTCGCCACAGTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGTTGGCTGCTGGGAACACTTCGTGACGACTGAAACCAAAGGAAAAGAGGAACTGGCTTTGTTTCGTAAAGTGGTGCACGTCTCATAGTGTCACAAAGCACATCCACGTGAGACGCGCACGCTTGGGGAAAATAAAGCCACGTTTCTTTCAACTGGCTATTCAGCGAGTGCATGCATGCTGTTCACACTTTAATAAAGCTTTCAAAATAAATCAAACGCATTTTTGTGTCTCATTTTTATGTGCACATGTTCTTTATTTATGTCCATATTACACTGTTC
>TCONS_00058477
CGTACAGTGCAGTCATCCATAAAGTAGAAAGCACTACTAAACCCCTCGCCACAGTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000082167

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061617 False 546 lncRNA 0.44 2 3169745 3171100
TCONS_00058477 True 91 miRNA 0.44 1 3170736 3170826

Neighbor

gene id symbol gene type direction distance location
XLOC_029806 supt4h1 coding upstream 41062 3118231 ~ 3128683 (+)
XLOC_029805 hpda coding upstream 317460 2815021 ~ 2852285 (+)
XLOC_029804 NA coding upstream 426877 2734234 ~ 2742868 (+)
XLOC_029803 rabepk coding upstream 460074 2693601 ~ 2709671 (+)
XLOC_029802 CABZ01053333.1 coding upstream 605484 2564145 ~ 2564261 (+)
XLOC_029808 CABZ01074085.1 coding downstream 277397 3448497 ~ 3462861 (+)
XLOC_029809 ywhag1 coding downstream 330759 3501859 ~ 3545221 (+)
XLOC_029810 rpain coding downstream 720385 3891485 ~ 3908849 (+)
XLOC_029811 znhit3 coding downstream 756889 3927989 ~ 3937715 (+)
XLOC_029812 pigw coding downstream 835737 4006837 ~ 4011049 (+)
XLOC_029801 CABZ01053329.1 non-coding upstream 696118 2473511 ~ 2473627 (+)
XLOC_029800 NA non-coding upstream 715731 2451902 ~ 2454014 (+)
XLOC_029799 NA non-coding upstream 759468 2409176 ~ 2410277 (+)
XLOC_029823 NA non-coding downstream 1738254 4909354 ~ 4914933 (+)
XLOC_029824 NA non-coding downstream 1992163 5163263 ~ 5171332 (+)
XLOC_029825 NA non-coding downstream 2071566 5242666 ~ 5326157 (+)
XLOC_029826 CU929057.1 non-coding downstream 2180971 5352071 ~ 5352187 (+)

Expression


Co-expression Network