XLOC_029808 (CABZ01074085.1)


Basic Information

Item Value
gene id XLOC_029808
gene name CABZ01074085.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 3448497 ~ 3462861 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058478
tgcCAATTTATGGATATATTGTAGTATAATAAGCAGTCAGACAACTGTAGCAGAGTATAAACAGCAGACTGAATGCCAAAAAGAGAGTGTTTGCATGCTGTTAACGACTTACTGAAGGTGTTTGTCTGTGCTGTAGGCATTCAGGTGTGTTTCTTCTGCCATGAAAGCTCAGCGTGTGTCAGACGCTTTGCGCAGATGCTGGAAATCTGCTACCTGGATCCTCACCTGCCTGCTGGTATCAGTGTTCCTCATCGCCATCACCAATATTCTGCCATCCGGAGATCACAAGCTGAAACGAAGATCAGTCCCCAGTAAGTATCCTtataaaataaaccttttttgcatttaaaaat
>TCONS_00058479
CTTGATGATGCTTTGTTTAATAGTTTTTCATCTTTTCTGTGTGCAGGAGATCACAAGCTGAAACGAAGATCAGTCCCCACCAATAACACAAGTCCTGCAGGGAAAACACAGTCTCAAGGTGAGCATCTCAGAAATGTATTTCACACTCACTTGTTTTTCGCTCAAACTATTTATGTAAAATG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117803

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058478 False 353 lncRNA 0.42 2 3448497 3457677
TCONS_00058479 True 182 lncRNA 0.38 2 3457557 3462861

Neighbor

gene id symbol gene type direction distance location
XLOC_029807 NA coding upstream 277397 3169745 ~ 3171100 (+)
XLOC_029806 supt4h1 coding upstream 319814 3118231 ~ 3128683 (+)
XLOC_029805 hpda coding upstream 596212 2815021 ~ 2852285 (+)
XLOC_029804 NA coding upstream 705629 2734234 ~ 2742868 (+)
XLOC_029803 rabepk coding upstream 738826 2693601 ~ 2709671 (+)
XLOC_029809 ywhag1 coding downstream 38998 3501859 ~ 3545221 (+)
XLOC_029810 rpain coding downstream 428624 3891485 ~ 3908849 (+)
XLOC_029811 znhit3 coding downstream 465128 3927989 ~ 3937715 (+)
XLOC_029812 pigw coding downstream 543976 4006837 ~ 4011049 (+)
XLOC_029813 ggnbp2 coding downstream 553410 4016271 ~ 4052298 (+)
XLOC_029802 CABZ01053333.1 non-coding upstream 884236 2564145 ~ 2564261 (+)
XLOC_029801 CABZ01053329.1 non-coding upstream 974870 2473511 ~ 2473627 (+)
XLOC_029800 NA non-coding upstream 994483 2451902 ~ 2454014 (+)
XLOC_029823 NA non-coding downstream 1446493 4909354 ~ 4914933 (+)
XLOC_029824 NA non-coding downstream 1700402 5163263 ~ 5171332 (+)
XLOC_029825 NA non-coding downstream 1779805 5242666 ~ 5326157 (+)
XLOC_029826 CU929057.1 non-coding downstream 1889210 5352071 ~ 5352187 (+)
XLOC_029828 CABZ01075627.1 non-coding downstream 2152470 5615331 ~ 5615446 (+)

Expression


Co-expression Network