G1108760


Basic Information

Item Value
gene id G1108760
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 73129730 ~ 73132638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1260590
gtagatagagatatatatatatatatatctctatcaaaATGGCGTCATAACAATGACTCTTGTTACCTAACATTCAGAGACGTGTTATGGCGTCTAACATTTGGTATACCAAGTTTATAACTTCTATAATGCTATAGTTCAAGTAAAGTACCACTTAAACAAAGACTCATTAGATTAAAATGTTTTGATTTTTGTTTTAGTCAGTCACAAGTTCGGGTACTTTTGTGAATCCTCAAAACATTATTACAGGCCAATCAATGTACTGCTATAGAATGTCTTGATTCTTAAATTGGTTGGAGAATCCTAATAAAGCTACTGGGCTACAGTAAATGCTCTCCCCAATTTTTAATATCACAGGTTTTTTGTATTTTTCCTGTGATGCCAACTAAGTTAATGTGGACTTGACTCAAATGAACCAAAGTGGTGTGGTAGTTTGTTCTTGTAGTTACTTTTAAAATATGTATTGAAATGTACAATTAGTATAACATTCTCTTCAATGGTTCAATGACAGAAAGAACTATGCCAACTGCTTTTGCTGACAATAGTAATGGACTTGAAGCCCATTTGTAGTTTAACCAAAGACCTTTATTGCTATTATGTTtccttttaatttaaaaaaaataatttttcaTTTTAGTAATCTAAGCAAATTGTTAACCTAATACCTAATGTAGATTTGGTGTGCATTTACAGAAACTAATGGCATCACTGTCCTTTTTTGTAAAACAAATGACTGTGGTCAGCAGCATACACATCATTCTAATTGGCAGTTGTCTACAGTGAAGGAATTTCAGAAGTTAGTGACATGTTAATCTTCTTAAGTGGCCATATAGATgagtaccagtggaggctgctgaggggaggacggctcataatattgtctggaacggagtgaatggaatggtatttgataccattccaccgattccgctccagccgttaccacgagcccgtcctccccaattaaggtgccactgtGAGTACTATTTTGAAGTATGTTTGTCTTTTCACTTTACAGCTAAAATCTCTTAATCAGTTTTAAATATTGATGGTTGTGCACTACTTGTATGCTGTCAGGAGTATAGATTATACTTTGACTGTAATGTGCTTTTGTTTTCATTTGACTggtgtttttcttttgttttaatTCACAATTTACTGCAGTCATTGGAAAGATGGCGATAGTGTATCATTTGTTTATTGGTTAGATATGAGTGAGTCATTGACGGGTGAAATGACAACTTGATTTATTTAAACCAGCATCAATGGCAGATACAGATGTGAGTAAGTTTAAGGAGCAACTCTTATCACTCATTTGTTCTTGGTCCTTAAGCCCTCTTCAATGTGGCATACTAAGTATACATCTTCCTTTTACACTGAATAAGGAAAAATGTAAGCTCATATTTTATAAATATGGCTCTAAATCATTAAATGTTATGGCTATATTAAACTAATGTTCTTTTACTATGGACCAATttcgtttttttaaatgttagaaATCTGTGCCTTTTGATGTTAATGTCATATTTTACCTGGCATTTGAAGAGTATTGCTCTTAATGAGGGTAAATTGTTATATTACAGTAAAACTGAAAAATAATCCAAATTCTAGTGCCTTTAGATAATTGTATGTACCATAATCTCCCCAATTAAAATCTGTGGTGGATACCACTCAGATGATTAGCTTTTTCGATATTATCACTTAATGATTCTCGAATGGTAAAATTTGCTTTGTCGCTCTGAAAAGTTAAGAATTCTGTGTAAAGAGCTTGCATTCATAAGTGTTCAGAGAAGGGCCGTTTTGAACAAGACTGCATGTTTCATAAGGGAGGCTTAGGGCAACCTTAGAATGATGAATACTGCTTCTTCATCTCAGTCTGTATTTGCCATATCACTCATAACATGCCACTATACCTACCACCAATAAATATGATTCTTTCTGTACTCATCTTTTATTGGCACAAGAAAAACAGACCAATTACTGTTAAAGAAAAGCACCAAGTAGGACTCATTGTTTTGTAAATGTAATTGAGATGTAACAATGCTCTGCAGTGGATTAGCATAATCTATTTTGCATTCTTGTGAAGTGTTTGTTTCCTTGTTTTATTAAATATTGTGATCATGGAACCTGAAGATTTTATGCAATCTTGTACGTACATAAATGTATGAAGCTGTTCCAATTTtagtatgaaaaaaaaaaatgcatattgCAGCAGAACTTTTGTAAAAACATTTAATTGTTCCCAATAGTTAACTTCAAAATGTTCATTTAACATAGAAACCCTGAAATATTGAATGTACCGTTCTAAATGAGATATTTAATAGGTCACTGGAATAAAATGGAGAGCAGTTCATCCGTTAGCTATGATGTAGCATCTAGTTTTGTGAATTGCTATACAATGAAATAAATGTACGACACATGCAGTTTTCCGGTCTCTGTATTTATCAGTGTAATGATTAAGAGAAGGGGggaatacattttattttctcaGGGTTTCAGTTACGACTGTAGGATAAAAGGTTTTTAATTGTGAACTGTAGTTCATAGATGTATTTACGCTGATGTCGATGGAAGTAGACATTTGTATTACGAATGAGAAACATGTCCCTTATTTTGTTACAAAGTATGGACAAATAGGACATTGTATATTGAATTAGTATTCAACTACCCCATAGAAATGATCAATGGGAGTTCCCCTGTGTTAAAGTTCATCCTCTTTATGGAATCAAAGAATGGCCTGATTAGGCTTTTTACTAAAAATTAAGTAGAAGGTATTGAATCTTTTGCTTGTAGAGTATCATTAACTTGTTCAATTGTACTGCAACATTATGCAATGGTTTACAGAATTCACAATTTGTATCTTGGGAATTAAATTTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1260590 True 2877 lncRNA 0.33 2 73129730 73132638

Neighbor

gene id symbol gene type direction distance location
LOC110538279 LOC106607360 coding upstream 1823 73115643 ~ 73127907 (+)
LOC110538277 LOC106601099 coding upstream 25823 73039865 ~ 73103907 (+)
LOC110538276 LOC106601100 coding upstream 106137 73011322 ~ 73023593 (+)
LOC110538275 LOC106607358 coding upstream 137345 72978834 ~ 72992385 (+)
LOC110538274 baiap3 coding upstream 198187 72892973 ~ 72931543 (+)
LOC110538463 LOC106601093 coding downstream 202383 73335021 ~ 73376744 (+)
LOC110538462 rpc11 coding downstream 252117 73384755 ~ 73386199 (+)
mgrn1b LOC106607363 coding downstream 290693 73423331 ~ 73431408 (+)
LOC110538457 LOC106601143 coding downstream 307131 73439769 ~ 73443382 (+)
LOC110538456 LOC106601142 coding downstream 327261 73459899 ~ 73462891 (+)
G1108748 NA non-coding upstream 86046 73042471 ~ 73043684 (+)
G1108720 NA non-coding upstream 131197 72998200 ~ 72998533 (+)
G1108717 NA non-coding upstream 134417 72995084 ~ 72995313 (+)
G1108707 NA non-coding upstream 162281 72967207 ~ 72967449 (+)
G1108702 NA non-coding upstream 168381 72960954 ~ 72961349 (+)
G1108762 NA non-coding downstream 58552 73191190 ~ 73191579 (+)
G1108809 NA non-coding downstream 82896 73215534 ~ 73265081 (+)
G1108854 LOC106601094 non-coding downstream 138635 73271273 ~ 73272125 (+)
G1109490 NA non-coding downstream 153971 73286609 ~ 73287015 (+)
G1109504 NA non-coding downstream 171556 73304194 ~ 73304612 (+)
LOC110538241 LOC106607115 other upstream 1111440 72016045 ~ 72019145 (+)
psmg3 psmg3 other upstream 1186931 71941515 ~ 71942804 (+)
G1105655 NA other upstream 2223301 70902905 ~ 70906429 (+)
G1105467 LOC106601028 other upstream 2495759 70612303 ~ 70633971 (+)
G1105393 NA other upstream 2758519 70370755 ~ 70371211 (+)
G1109505 NA other downstream 172787 73305425 ~ 73306154 (+)
G1109778 NA other downstream 701005 73833643 ~ 73834606 (+)
G1109786 NA other downstream 713617 73846255 ~ 73846794 (+)
G1111126 LOC106578813 other downstream 1827628 74960266 ~ 75048356 (+)

Expression


Co-expression Network