LOC110538241 (LOC106607115)


Basic Information

Item Value
gene id LOC110538241
gene name LOC106607115
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 72016045 ~ 72019145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624938.2
TCAGACACCAAATCCATGCAGAGTGCAACATTAAATGGAGAGTGGAAGGTGCTGCTATAATGTAAGTTGAATGCGAAACCTTGTATGGGATTGGTGTGTTGAAGAAGATAAAGTGTACATTGTGTTTCTAAATGGACTTTGATTGAATGATACCGTGGTGTGAAAATCTACCTGGAGATGGATCATGGGTCAGATTCGCATTCCTGTCTCCATTTCTCTGaagcccagccctctctctcacacccaggAGTCAGTCTGGGCCCACTGTGAGTCATGTGACTGCTAAGGAAGGAGGGGGGAACAGCAGGATAGGAGAGAGAACCTCACCAGACTAAGGTGAGACCCCCTTACCTGCTGAGTGCAGTCCTCTCTCGCCTCCCCACCCATCACCTGCATCTCACCTGAACTCCTCCTGAGTCTCCAATTCAACCTTCATCTTAGGTAGCCTTCTGGATCGAGAGTCAGTGTATGGCTGATGACTGCAATTCATCCCTCAGAATTGATGGTGGAAGATTCTGTGATTCCTTTCCTTCTGGATCTGGTGATGTACTTCATTAACAGCCCTATCTGATTTCACTGTGGTAAAGAAGCCTCAAGACTTGGCTCTGCTCCATCTTGTGCCAACCTCAACAAGAATGTTTAGTCTGATGTTGTGAAGTGCTCCTGAGATACGTCCCATTGTTTTGGTATCAGACTGTTCCCTTTATACCAGTGGATTGACACTTAAGACTCGGGACTCCTCTAAGAGCTTTTGGATAATGTTTGGCCCTGGGCAGCTGGTCTCCACTCTTCTACCTGCAGTCTTCCACTCCTCCGCAGCTCACTTGTTCCCTGCGTTCCCCACCAGACTGGGCTCCCCTCCACAGATCCTGATCCCTGGGCCCCTGATCAGCTATGAGTCCCTGCGGAGTTACTTGCAACCAGAGCCCTGCAAAGAGGCTCTGTTCCTGGCCACACAGGCAGCTGGGATGGGGCAGTTCACGGCCAGCATGGATGAACAGAGGCCAGTGAAGCAGCGTCGTGCGCGGGCCAACTACAGCAGCTGGCAGCTGGAGGAGCTAGAGAAGACCTTTGAGAACACCCACTACCCTGACGTCTTCATGAGGGAAGCTCTGGCCCTCAGACTGGACCTCATCGAGGCCAGAGTGCAGGTGTGGTTTCAGAATCGCCGGGCTAAGATGCGGAGGCAGCTGAAGTTGCAGGGCCAGCTAGGAGAGCCCTTTCCCAGGAAGGACAATGCCGAggacacaacaacagacaaacccAACAAGAGCTTACCGGAGCTAGAGAGCTCTGACAGCGAGCACTGGGAGAGGAGGCAGGACAAAGGAAGCTATCCCTGGACTAAAGTACCTCGTTCTGCTGTGATGACCACCCCCATACAGGGTATGATTCAGGGGCCAGCAGGGGAatgggaggggatggaggggccCAGTCCAGAAGAGTTCCGCTGCTGTAGCATTGCCAAGCTGAGGGCCAAGGCCAGGGAGCACGAGGCTGAGATCCATAGCACTGTGGCCAggtcaggaggaggagagacatcagcactgcagacacaaacacagaacacTGATGACAGAGAGAGCAACTGATatggctctttctctctgcatggcTTTTGCAAACAGGTCCCTAAGACCTCATCATGGTTGAGGCAACTTGCCTAAATACCCCATCCTTGGTTTTATTCATTCTGTTATTCAATGAGGATATGAACTAACATTTACAAAAGGTGCTGATTTTTTGTTTAGTATTAAAAAAAATGATTGTGTTTTGAAATGCCATTATTTTTCTGTACTGGACATATTTTTCTATCAACAATCACGCTAAACGTGTATTTTAAATGCTCAGACTAGGATGAGgtgaatatatagtatatccATAGTAACATCTTATAAATGTATAGTATATCCATAGTAACATCTTATAAATGTATAGAATAAACGTCTTATAAATATATAGTATATCCACAGCAACATCTTATAAATATATAGGTTATCCATAGCAACATCTTATAAATATATAGTATATCCATAGCAACATCTTATAAATATATAGGTTATCCATAGCAACATCCTATAAATATATAGGTTATCCATAGCAACATCTTATAAATATATAGGTTATCCATAGCAACATCTTATAAATATATAGGTTATCCATAGCAACATCCTATAAATATATAGGTTATCCATAGCAACATCTTATAAATATATAGGTTATCCATAGCAACATCCTATAAATATATAGGTTATCCAT
>TU1257810
CTGTACCAGTTTGTCATCGGAATCGTTTCTTCTTCTGCTGCTTGACAACTATTAATTGAAAGACGAGCGATATTCTCAAATATTTGTGGTATACGTGTTTCAACTGAACGTTCAAGcgctgtttttttttatgtcattTCCACACTTTGATGTCTGATCCATCACTTTGATTGAAATTTACGAAGCTAAAAGATGTCTTAACTTGTTCAAAGTAAACCTCAGACACCAAATCCATGCAGAGTGCAACATTAAATGGAGAGTGGAAGGTGCTGCTATAATGTAAGTTGAATGCGAAACCTTGTATGGGAT
>TU1257805
GATGAACAGAGGCCAGTGAAGCAGCGTCGTGCGCGGGCCAACTACAGCAGCTGGCAGCTGGAGGAGCTAGAGAAGACCTTTGAGAACACCCACTACCCTGACGTCTTCATGAGGGAAGCTCTGGCCCTCAGACTGGACCTCATCGAGGCCAGAGTGCAGGTGTGGTTTCAGAATCGCCGGGCTAAGATGCGGAGGCAGCTGAAGTTGCAGGGCCAGCTAGGAGAGCCCTTTCCCAGGAAGGACAATGCCGAggacacaacaacagacaaacccAACAAGAGCTTACCGGAGCTAGAGAGCTCTGACAGCGAGCACTGGGAGAGGAGGCAGGACAAAGGAAGCTATCCCTGGACTAAAGTACCTCGTTCTGCTGTGATGACCACCCCCATACAGGGTATGATTCAGGGGCCAG

Function

NR:

description
paired mesoderm homeobox protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624938.2 False 2259 mRNA 0.46 3 72016263 72019145
TU1257810 False 309 lncRNA 0.37 1 72016045 72016353
TU1257805 True 412 TUCP 0.57 2 72017593 72018290

Neighbor

gene id symbol gene type direction distance location
LOC110538240 LOC106607338 coding upstream 5403 71989879 ~ 72010860 (+)
tmem184a LOC106607336 coding upstream 50607 71948230 ~ 71965656 (+)
psmg3 psmg3 coding upstream 73459 71941515 ~ 71942804 (+)
mrm2 rrmj2 coding upstream 360537 71648593 ~ 71655726 (+)
LOC110538233 LOC106607331 coding upstream 369866 71631595 ~ 71646397 (+)
micall2a LOC106601118 coding downstream 3394 72022539 ~ 72037884 (+)
zfand2a LOC106601116 coding downstream 106067 72125212 ~ 72130074 (+)
LOC110538247 LOC106601153 coding downstream 133021 72152166 ~ 72161329 (+)
trnat-cgu-3 NA coding downstream 210353 72229498 ~ 72229569 (+)
LOC110538251 z3h7a coding downstream 243176 72262321 ~ 72273102 (+)
G1106195 NA non-coding upstream 48137 71930185 ~ 71968126 (+)
G1106205 LOC100194703 non-coding upstream 68927 71945727 ~ 71947336 (+)
G1106146 NA non-coding upstream 171540 71844369 ~ 71844723 (+)
G1106049 NA non-coding upstream 321563 71694464 ~ 71694700 (+)
G1105987 NA non-coding upstream 438956 71573714 ~ 71577307 (+)
G1107977 NA non-coding downstream 29361 72048506 ~ 72048709 (+)
G1107994 NA non-coding downstream 53246 72072391 ~ 72072747 (+)
G1108000 NA non-coding downstream 61890 72081035 ~ 72081346 (+)
G1108001 NA non-coding downstream 62648 72081793 ~ 72082010 (+)
G1108025 NA non-coding downstream 89075 72108220 ~ 72108622 (+)
G1105655 NA other upstream 1109834 70902905 ~ 70906429 (+)
G1105467 LOC106601028 other upstream 1382292 70612303 ~ 70633971 (+)
G1105393 NA other upstream 1645052 70370755 ~ 70371211 (+)
G1105357 NA other upstream 1689137 70324958 ~ 70327126 (+)
G1109505 NA other downstream 1286280 73305425 ~ 73306154 (+)
LOC110538462 rpc11 other downstream 1365663 73384755 ~ 73386199 (+)
G1109778 NA other downstream 1814498 73833643 ~ 73834606 (+)
G1109786 NA other downstream 1827110 73846255 ~ 73846794 (+)
G1111126 LOC106578813 other downstream 2941121 74960266 ~ 75048356 (+)
G1106236 NA non-coding downstream 972 72017325 ~ 72017542 (+)
LOC110538241 LOC106607115 other downstream 1240 72016045 ~ 72019145 (+)

Expression


Co-expression Network