LOC110538233 (LOC106607331)


Basic Information

Item Value
gene id LOC110538233
gene name LOC106607331
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 71631595 ~ 71646397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938295.1
ACACTTGTTCACCTGCGATTCCTAATATCCAGTTTGCAGTAATCCATATCTTGTCTAGTGCCTACAATAATGTTTGGACatatacagtactgctgcatAAGGTCTGAAATCTGGCAAAAGTCCAAAGTTCACTACAACTTTAAGAAATAGGAAATTATTCGAGGTTTTTTCTTCAGGAAATCACATGGAGGTGCTGTCGTGCTCACATGACAATCTGAACTATGGCAAGCGAGCTCAATGAAGATTGCTGAGCATGTTGACTACACTGATGGATTCTTAAGCAAGTTGTCCCTATATAAAGCACTGGCGTTGATCGCGCTTGCTCAGCAAGGAAAGCAACCAAGCCCGAAACTCTTAGAGAACTGCATACAAGAGTTCCCTAAGCCCCAACTTGGCGAGTTCAAGGTTCTCCAGACTCTGAGGATGCAGCCAACTCAGGAGAGCCCCCTCACGGTGCCCCAGACCCTGGGCAAGCTGCTTGCCAGGGAGACAGTCCAGGTGGAGCTAATTCCTGAAAAAAAGGGTCTGTTCCTCAAACACGTGGAGTACCAGATCACCAGCCAGCATTTTAAGATCTCTGTTTACCGGCGGTACACTGATTTCGATGTCTTCCACGAGCTCTTGCTGCAGAGGTTTGCCTACAGAATGGTGCCTGCACTGCCGCCTAAGAGAATGCTGAAAGGAGTCCTGACCTCCATGTCTGAGAGGGACTTTATAGAGGGAAGGCGGCGTGCTCTGGGCCGGTTCATCAACCTAGTGGCACGACACCCCTTCTTCTCTGAGGACGAACTGGTCAAGACCTTTCTCACCTTCAACGGCTCGGATGTTCAAGTGAAAATGCGTGATGCTTGCAAGAAAATGGGAGATGAATTCATGACTAATACAATGGCAACTCTGGCAAAGGATTATCTCCCAGCTGATATCCAGGCCCAGTTTTCATCAAGCAGAGAACTGATCAGGAATATCCACAACAGCTTTCACAAGCTGCGGGACCGGGCAGAAAAGATGGCAGAGCGCTCCAAGGAAAACGCCACTGATTTGCTAATGTTTGGAAGGGAGCTCAGTACACTGGGCTCCGACAGTTCACCCATTCCCTCTCTGGCCTCATCCCAAAGCACCTGGGGCATTCTCCGTCAGTCTCTGAAAGGCCTTTCCGTGGAGTTTGCTCTGCTAGCCGACAAAGGTGCTCAGCAGgggaggagagaagaggacgaTGTTGTGGAAAAACTGAATCTATTCTTGGATTTGCTGCAATCATACAGAGATCTGTGTGAGCGGCATGAGAAGGGAGTATTGCACGAGCACCAGAGAGCGCTGCAGAAGTACGGTATGATGAAGAGGCAGATGATGAGTGCCACAGTGCAGCCCAAAGAGCAGGTGTCAGTGGAGCAACTGGAGTCTCGCATTGTGCAGCAGGAGAACGCCATTCAGACCATGGAACTGCGGAACTACTTCTCCCTGTTCTGCCTTCACCAAGAGACTCAGCTCATCTTCACATACCTGCCCATCACCTCTCACATCCTGGGAGCCTTCGTCAACTCACAGGTCCAAGGTCACCAAGAGATGGGTGCCGTGTGGAATGATCTCCAGCAGAAGCTTGGGTGTCTCTTCGGTGTCGATGAAATGCAATCCCCTCCTCTTACACCCAAGTAGACACccatgtccccttctctctcaacGAGCGACGAATATGCTGCTTTGCAAGCCAAGAGACAGTCAAAGTCTCAGAAGGGACTGATGGTGAACTGTTTTCATAAAACCTTGAAAGACACTACAAACTGTGCCTTAAGTATCAATCAGTGGTGAGT
>XM_036938294.1
ATGGCAAGCGAGCTCAATGAAGGATCAGTGCCTCCATACTACAGGGAGGTGTATGAGGCCATCCGGAGTAAGATAGAGGAACGAGTGCAGGTGGAGGTCTTTAAGAGGTTGCTCAGCAGAACAGATCTCCCCAGTGCTGTGCAGGGCCAGATTGCTGAGCATGTTGACTACACTGATGGATTCTTAAGCAAGTTGTCCCTATATAAAGCACTGGCGTTGATCGCGCTTGCTCAGCAAGGAAAGCAACCAAGCCCGAAACTCTTAGAGAACTGCATACAAGAGTTCCCTAAGCCCCAACTTGGCGAGTTCAAGGTTCTCCAGACTCTGAGGATGCAGCCAACTCAGGAGAGCCCCCTCACGGTGCCCCAGACCCTGGGCAAGCTGCTTGCCAGGGAGACAGTCCAGGTGGAGCTAATTCCTGAAAAAAAGGGTCTGTTCCTCAAACACGTGGAGTACCAGATCACCAGCCAGCATTTTAAGATCTCTGTTTACCGGCGGTACACTGATTTCGATGTCTTCCACGAGCTCTTGCTGCAGAGGTTTGCCTACAGAATGGTGCCTGCACTGCCGCCTAAGAGAATGCTGAAAGGAGTCCTGACCTCCATGTCTGAGAGGGACTTTATAGAGGGAAGGCGGCGTGCTCTGGGCCGGTTCATCAACCTAGTGGCACGACACCCCTTCTTCTCTGAGGACGAACTGGTCAAGACCTTTCTCACCTTCAACGGCTCGGATGTTCAAGTGAAAATGCGTGATGCTTGCAAGAAAATGGGAGATGAATTCATGACTAATACAATGGCAACTCTGGCAAAGGATTATCTCCCAGCTGATATCCAGGCCCAGTTTTCATCAAGCAGAGAACTGATCAGGAATATCCACAACAGCTTTCACAAGCTGCGGGACCGGGCAGAAAAGATGGCAGAGCGCTCCAAGGAAAACGCCACTGATTTGCTAATGTTTGGAAGGGAGCTCAGTACACTGGGCTCCGACAGTTCACCCATTCCCTCTCTGGCCTCATCCCAAAGCACCTGGGGCATTCTCCGTCAGTCTCTGAAAGGCCTTTCCGTGGAGTTTGCTCTGCTAGCCGACAAAGGTGCTCAGCAGgggaggagagaagaggacgaTGTTGTGGAAAAACTGAATCTATTCTTGGATTTGCTGCAATCATACAGAGATCTGTGTGAGCGGCATGAGAAGGGAGTATTGCACGAGCACCAGAGAGCGCTGCAGAAGTACGGTATGATGAAGAGGCAGATGATGAGTGCCACAGTGCAGCCCAAAGAGCAGGTGTCAGTGGAGCAACTGGAGTCTCGCATTGTGCAGCAGGAGAACGCCATTCAGACCATGGAACTGCGGAACTACTTCTCCCTGTTCTGCCTTCACCAAGAGACTCAGCTCATCTTCACATACCTGCCCATCACCTCTCACATCCTGGGAGCCTTCGTCAACTCACAGGTCCAAGGTCACCAAGAGATGGGTGCCGTGTGGAATGATCTCCAGCAGAAGCTTGGGTGTCTCTTCGGTGTCGATGAAATGCAATCCCCTCCTCTTACACCCAAGTAGACACccatgtccccttctctctcaacGAGCGACGAATATGCTGCTTTGCAAGCCAAGAGACAGTCAAAGTCTCAGAAGGGACTGATGGTGAACTGTTTTCATAAAACCTTGAAAGACACTACAAACTGTGCCTTAAGTATCAATCAGTGGTGAGTAAATGTAGTTTACTCACTTTTTTCTTTGTGGGACAGTTTATCCATCTTTTGCGGAAAAATGCATTGAAGTCTCTGCTACCCGGCTATCAGTTtaccctctttttttttttttttttaccactataTCACTGATTTCAATGAATGGATGTGGTCTGCAGCTCGAGATATATTATACCGTACGTGCATCCTCACTAGGGATGTCAGAGGTTGATCAGTCAAAGGAGCTCATTGGGAAGTGGAAGAGTGCTTTGAAGAATGTGTACTGCTGCCTTGCTGTATGAGGAGAGGAAAATATTGATTTCATAATTGATATATAGGGAACATTTTGTTGAAAAGCTGGACCTTTCTGTGTTATTTTGTAGCTCACTGCCTTTACCATATGAGGGAATTCTTACCTACACTTCTTGGAGGATCATTCGCCTATGTTGAGGTATAATGTAGTGTCTTATTGCAGGCAGACACATTTAAGAATCCACTAATTAAGCTGATTGAAGATGTTGCCACACAGAGACGATAGGTTTCCTTGCCGCAGCCCGGTGTTGGCAATATAACCTTTTGTGTTTAAAATGACTAGCGTAAATGTTTAGAAAGATTCTAATCAGGGCAAAGCCTCATTTCTGATAAAGACAGGCAAACCAATATATATTGAAGTAAATGTAGTAGCAGCATGCTATTCAATGATTTGTTGGGAAGTACAATGTAAGTATTAATCATCCTACTGACCACACTTGTGCAACTGGGCTTGCTAGCTTGTTGTGTTGATATTCATGCAAAGGACTTCAGATTCCTCGCTTCAATCGAATCTTAGTTGCAGTACTGTGAAAAGCTACTTCAGTTTCTACGCAAGAGCCGAGCAATCTATCAAGAGGAAGTTTGATCAAATGTAAATAATGAATGATTTATGGCTGATATAACACTCCACCTGACCAATGGTGAACGTACCAAAGAAACATGCTACAATGCCACACAGTCATTAGTGCAATTATGAAGTAATTATCCTGTAATATTTTATTTCAGGTAGAAATTAAATGTGCTCTGTGTTAATGCCTCTGACAATGTTTCAGTTTGAACTGAGCTGCAATGTTGGTTCAGTGTTTACTTAATGTAGATTTGAAGAAaattatatttaatatttttcTGTGTATGTAATATTCAAGAATATTCTGATGTATCTTTTTCAATAATATACCCAATGATTTATTGTCCTCTTATTCAACAGTATACATTGATTCCATGTCTAAAGCATAAGATTATGTTAGTAAAGTTTTTCATTATTTGATCTGATGAAGAATTCAGTTTTCCACTCACAATTTTGAAGGTTTTACGGATGTGCAAATTGCATGTTTTACATGTAATTAAAGTACATGAATGAGGCTGTGTAACAAAATGGAGTCTCCCAATTAGAACTGAGTTATATTAAAGAGCTCTGGGGCAATACGTTTTGTTATTCAATGCATTCTTTTTTGTCTTCTCTGTGGAACTGTTAATTGGTTCCTCACAAGTTCTTATTATTGTGTCAACATAAGATATTGTCATAACCTTATTTTTTTGGCAAGTCTTAAATAATAAGAGGAACAAATGCTTTATCTGATCTTTGAGAAAGAACATTGGAACTAGGTGAAGGATGTGGATACAGGACCATTAACTATTGCAGTTATGTTTAATCTCACTTAAATAAAAAGTATTAGATACCCA

Function

NR:

description
sorting nexin-8-like isoform X1

GO: NA

KEGG:

id description
K17922 SNX8, MVP1; sorting nexin-8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938295.1 False 1808 mRNA 0.49 12 71631595 71644702
XM_036938294.1 True 3410 mRNA 0.43 13 71631816 71646397

Neighbor

gene id symbol gene type direction distance location
lfng LOC106607332 coding upstream 62815 71560690 ~ 71568780 (+)
LOC110538230 rs11 coding upstream 116732 71511846 ~ 71514863 (+)
LOC118937918 NA coding upstream 117082 71514430 ~ 71514513 (+)
LOC118937915 NA coding upstream 118382 71513132 ~ 71513213 (+)
LOC118937916 NA coding upstream 118832 71512680 ~ 71512763 (+)
mrm2 rrmj2 coding downstream 2196 71648593 ~ 71655726 (+)
psmg3 psmg3 coding downstream 295118 71941515 ~ 71942804 (+)
tmem184a LOC106607336 coding downstream 301833 71948230 ~ 71965656 (+)
LOC110538240 LOC106607338 coding downstream 343482 71989879 ~ 72010860 (+)
LOC110538241 LOC106607115 coding downstream 369866 72016045 ~ 72019145 (+)
G1105987 NA non-coding upstream 54288 71573714 ~ 71577307 (+)
G1105982 NA non-coding upstream 72363 71558430 ~ 71559232 (+)
G1105980 NA non-coding upstream 74499 71556873 ~ 71557096 (+)
G1105976 NA non-coding upstream 81469 71549806 ~ 71550126 (+)
G1105943 NA non-coding upstream 210180 71421211 ~ 71421415 (+)
G1106049 NA non-coding downstream 48067 71694464 ~ 71694700 (+)
G1106146 NA non-coding downstream 197972 71844369 ~ 71844723 (+)
G1106195 NA non-coding downstream 283788 71930185 ~ 71968126 (+)
G1106205 LOC100194703 non-coding downstream 299330 71945727 ~ 71947336 (+)
G1105655 NA other upstream 725166 70902905 ~ 70906429 (+)
G1105467 LOC106601028 other upstream 997624 70612303 ~ 70633971 (+)
G1105393 NA other upstream 1260384 70370755 ~ 70371211 (+)
G1105357 NA other upstream 1304469 70324958 ~ 70327126 (+)
G1105281 NA other upstream 1436923 70162689 ~ 70194672 (+)
G1109505 NA other downstream 1659028 73305425 ~ 73306154 (+)
LOC110538462 rpc11 other downstream 1738411 73384755 ~ 73386199 (+)
G1109778 NA other downstream 2187246 73833643 ~ 73834606 (+)

Expression


Co-expression Network