RNA id: XM_036938294.1


Basic Information

Item Value
RNA id XM_036938294.1
length 3410
RNA type mRNA
GC content 0.43
exon number 13
gene id LOC110538233
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 71631595 ~ 71646397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCAAGCGAGCTCAATGAAGGATCAGTGCCTCCATACTACAGGGAGGTGTATGAGGCCATCCGGAGTAAGATAGAGGAACGAGTGCAGGTGGAGGTCTTTAAGAGGTTGCTCAGCAGAACAGATCTCCCCAGTGCTGTGCAGGGCCAGATTGCTGAGCATGTTGACTACACTGATGGATTCTTAAGCAAGTTGTCCCTATATAAAGCACTGGCGTTGATCGCGCTTGCTCAGCAAGGAAAGCAACCAAGCCCGAAACTCTTAGAGAACTGCATACAAGAGTTCCCTAAGCCCCAACTTGGCGAGTTCAAGGTTCTCCAGACTCTGAGGATGCAGCCAACTCAGGAGAGCCCCCTCACGGTGCCCCAGACCCTGGGCAAGCTGCTTGCCAGGGAGACAGTCCAGGTGGAGCTAATTCCTGAAAAAAAGGGTCTGTTCCTCAAACACGTGGAGTACCAGATCACCAGCCAGCATTTTAAGATCTCTGTTTACCGGCGGTACACTGATTTCGATGTCTTCCACGAGCTCTTGCTGCAGAGGTTTGCCTACAGAATGGTGCCTGCACTGCCGCCTAAGAGAATGCTGAAAGGAGTCCTGACCTCCATGTCTGAGAGGGACTTTATAGAGGGAAGGCGGCGTGCTCTGGGCCGGTTCATCAACCTAGTGGCACGACACCCCTTCTTCTCTGAGGACGAACTGGTCAAGACCTTTCTCACCTTCAACGGCTCGGATGTTCAAGTGAAAATGCGTGATGCTTGCAAGAAAATGGGAGATGAATTCATGACTAATACAATGGCAACTCTGGCAAAGGATTATCTCCCAGCTGATATCCAGGCCCAGTTTTCATCAAGCAGAGAACTGATCAGGAATATCCACAACAGCTTTCACAAGCTGCGGGACCGGGCAGAAAAGATGGCAGAGCGCTCCAAGGAAAACGCCACTGATTTGCTAATGTTTGGAAGGGAGCTCAGTACACTGGGCTCCGACAGTTCACCCATTCCCTCTCTGGCCTCATCCCAAAGCACCTGGGGCATTCTCCGTCAGTCTCTGAAAGGCCTTTCCGTGGAGTTTGCTCTGCTAGCCGACAAAGGTGCTCAGCAGgggaggagagaagaggacgaTGTTGTGGAAAAACTGAATCTATTCTTGGATTTGCTGCAATCATACAGAGATCTGTGTGAGCGGCATGAGAAGGGAGTATTGCACGAGCACCAGAGAGCGCTGCAGAAGTACGGTATGATGAAGAGGCAGATGATGAGTGCCACAGTGCAGCCCAAAGAGCAGGTGTCAGTGGAGCAACTGGAGTCTCGCATTGTGCAGCAGGAGAACGCCATTCAGACCATGGAACTGCGGAACTACTTCTCCCTGTTCTGCCTTCACCAAGAGACTCAGCTCATCTTCACATACCTGCCCATCACCTCTCACATCCTGGGAGCCTTCGTCAACTCACAGGTCCAAGGTCACCAAGAGATGGGTGCCGTGTGGAATGATCTCCAGCAGAAGCTTGGGTGTCTCTTCGGTGTCGATGAAATGCAATCCCCTCCTCTTACACCCAAGTAGACACccatgtccccttctctctcaacGAGCGACGAATATGCTGCTTTGCAAGCCAAGAGACAGTCAAAGTCTCAGAAGGGACTGATGGTGAACTGTTTTCATAAAACCTTGAAAGACACTACAAACTGTGCCTTAAGTATCAATCAGTGGTGAGTAAATGTAGTTTACTCACTTTTTTCTTTGTGGGACAGTTTATCCATCTTTTGCGGAAAAATGCATTGAAGTCTCTGCTACCCGGCTATCAGTTtaccctctttttttttttttttttaccactataTCACTGATTTCAATGAATGGATGTGGTCTGCAGCTCGAGATATATTATACCGTACGTGCATCCTCACTAGGGATGTCAGAGGTTGATCAGTCAAAGGAGCTCATTGGGAAGTGGAAGAGTGCTTTGAAGAATGTGTACTGCTGCCTTGCTGTATGAGGAGAGGAAAATATTGATTTCATAATTGATATATAGGGAACATTTTGTTGAAAAGCTGGACCTTTCTGTGTTATTTTGTAGCTCACTGCCTTTACCATATGAGGGAATTCTTACCTACACTTCTTGGAGGATCATTCGCCTATGTTGAGGTATAATGTAGTGTCTTATTGCAGGCAGACACATTTAAGAATCCACTAATTAAGCTGATTGAAGATGTTGCCACACAGAGACGATAGGTTTCCTTGCCGCAGCCCGGTGTTGGCAATATAACCTTTTGTGTTTAAAATGACTAGCGTAAATGTTTAGAAAGATTCTAATCAGGGCAAAGCCTCATTTCTGATAAAGACAGGCAAACCAATATATATTGAAGTAAATGTAGTAGCAGCATGCTATTCAATGATTTGTTGGGAAGTACAATGTAAGTATTAATCATCCTACTGACCACACTTGTGCAACTGGGCTTGCTAGCTTGTTGTGTTGATATTCATGCAAAGGACTTCAGATTCCTCGCTTCAATCGAATCTTAGTTGCAGTACTGTGAAAAGCTACTTCAGTTTCTACGCAAGAGCCGAGCAATCTATCAAGAGGAAGTTTGATCAAATGTAAATAATGAATGATTTATGGCTGATATAACACTCCACCTGACCAATGGTGAACGTACCAAAGAAACATGCTACAATGCCACACAGTCATTAGTGCAATTATGAAGTAATTATCCTGTAATATTTTATTTCAGGTAGAAATTAAATGTGCTCTGTGTTAATGCCTCTGACAATGTTTCAGTTTGAACTGAGCTGCAATGTTGGTTCAGTGTTTACTTAATGTAGATTTGAAGAAaattatatttaatatttttcTGTGTATGTAATATTCAAGAATATTCTGATGTATCTTTTTCAATAATATACCCAATGATTTATTGTCCTCTTATTCAACAGTATACATTGATTCCATGTCTAAAGCATAAGATTATGTTAGTAAAGTTTTTCATTATTTGATCTGATGAAGAATTCAGTTTTCCACTCACAATTTTGAAGGTTTTACGGATGTGCAAATTGCATGTTTTACATGTAATTAAAGTACATGAATGAGGCTGTGTAACAAAATGGAGTCTCCCAATTAGAACTGAGTTATATTAAAGAGCTCTGGGGCAATACGTTTTGTTATTCAATGCATTCTTTTTTGTCTTCTCTGTGGAACTGTTAATTGGTTCCTCACAAGTTCTTATTATTGTGTCAACATAAGATATTGTCATAACCTTATTTTTTTGGCAAGTCTTAAATAATAAGAGGAACAAATGCTTTATCTGATCTTTGAGAAAGAACATTGGAACTAGGTGAAGGATGTGGATACAGGACCATTAACTATTGCAGTTATGTTTAATCTCACTTAAATAAAAAGTATTAGATACCCA

Function

GO: NA

KEGG:

id description
K17922 SNX8, MVP1; sorting nexin-8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1257537 lncRNA upstream 54509 71573714 ~ 71577307 (+) True G1105987
TU1257527 lncRNA upstream 72584 71558430 ~ 71559232 (+) True G1105982
TU1257525 lncRNA upstream 74720 71556873 ~ 71557096 (+) True G1105980
TU1257521 lncRNA upstream 81690 71549806 ~ 71550126 (+) True G1105976
TU1257488 lncRNA upstream 210401 71421211 ~ 71421415 (+) True G1105943
TU1257603 lncRNA downstream 48067 71694464 ~ 71694700 (+) True G1106049
TU1257703 lncRNA downstream 197972 71844369 ~ 71844723 (+) True G1106146
TU1257753 lncRNA downstream 283788 71930185 ~ 71968126 (+) True G1106195
TU1257765 lncRNA downstream 299330 71945727 ~ 71947336 (+) True G1106205
TU1257810 lncRNA downstream 369648 72016045 ~ 72016353 (+) False LOC110538241
XM_021624922.2 mRNA upstream 63036 71560690 ~ 71568780 (+) True lfng
XM_021624921.2 mRNA upstream 116953 71511846 ~ 71514863 (+) True LOC110538230
XM_021624928.2 mRNA downstream 2196 71648593 ~ 71655726 (+) True mrm2
XM_021624931.2 mRNA downstream 295118 71941515 ~ 71942804 (+) False psmg3
XM_021624932.2 mRNA downstream 295125 71941522 ~ 71942804 (+) False psmg3
XM_021624933.2 mRNA downstream 301833 71948230 ~ 71965656 (+) True tmem184a
XR_005035132.1 mRNA downstream 343482 71989879 ~ 72008243 (+) False LOC110538240
TU1257166 other upstream 725387 70902905 ~ 70906429 (+) False G1105655
TU1257167 other upstream 725387 70902905 ~ 70906429 (+) False G1105655
TU1257168 other upstream 725387 70902905 ~ 70906429 (+) True G1105655
TU1256950 other upstream 997845 70612303 ~ 70633971 (+) True G1105467
TU1256863 other upstream 1260605 70370755 ~ 70371211 (+) True G1105393
TU1257763 other downstream 295154 71941551 ~ 71942799 (+) True psmg3
TU1257805 other downstream 371196 72017593 ~ 72018290 (+) True LOC110538241
TU1261422 other downstream 1659028 73305425 ~ 73306154 (+) True G1109505
TU1261395 other downstream 1738411 73384808 ~ 73385867 (+) True LOC110538462
TU1261764 other downstream 2187246 73833643 ~ 73834606 (+) True G1109778

Expression Profile