RNA id: TU1257765


Basic Information

Item Value
RNA id TU1257765
length 1590
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1106205
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 71945727 ~ 71947336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgaataaagaatggtaccaacacatcctccgagagcaacttctcccaaccatccaggaacagtttgttgacgaacaatgccttttccagcatgatggagtacCTTGCCAAAAGGCAAAAGTGACAAcaaagtggctcggggaacaaaacatcaatattttgggaccatggccaggaaactccccagaccttaatcccattgagaacttgtggtcaatcctcaagaggtgaaAGGACAAACAAAAaaccacaaattctgacaaaatccaagcattgattatgtaaAAATGggcagacatcagtcaggatgtggcccagaagttaattgacagcatgccagggtggattgcagaggtactgcaaaaaatattgactctttgcatcaacttcatgtaattgtcaataaaaagcCTTTGACACCTGTGAAATGCTTGAAATTATACtgcagtattccatagtaacatctgacaaaaatatctaaagacactgaagcagcaaactttgtggaaattaatatttgtgtcattctcaacttttggccacgacgttgcttcaatatatgtacatacttttcctgcctcatgatgccatctattttgttaagtgcactagtccctcctgcagcaaagcacccccacaacatgatgctgccacccctgtgcttcacagttgggatggtgttcttcggcttgcaagcatccccctttttcctccaaacataacgatggtcattatggccaaacagttgtatttttgtttcatcagaccagaggacatttctccaaaaagtacgatatttgtccccatgtgcagttgcaatctgtagtctggcttttttatggtggttttggagcagtggcttcatccttgctgagcagcctttcaggttatgtcaatataggactcgttttactgtggatatagatacttttgtacctgtttcccccagcatcttcacatggtcctttgctgttgttctgggattgatttgcacttttcgcactaaagtacgttcatctctaggagaccgaacgcgtctccttcctgagcggtatgacggctgcgtggtcccatggtgtttatacttgcatactattgtttgtacagatgaacatggtaccttcaggcatttggaaattgttcccaaggatgaatcagacttgtggaggtctacaattttttttctgaggtcttggctgatttcttttgattttcccatgatatcaagcaaagaggcactgagtttgaaggtaggccttgaaatacatccacaggtacacctccaatttaatcaaatgatgtcaattagcctatcagaagcttctaaagccatgagatcattttatggaattttccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacattgaattataagtgatataatctgtctgtaaacaattgttggaaaaatgacttgtgtcatgcacaaagtagatgtcctaactgacttgccaaaactagtttgtggagtggttgaaaacaagttttaatgactccaacctaagtgtatgtaaacttccaacttcaactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1257703 lncRNA upstream 101004 71844369 ~ 71844723 (+) True G1106146
TU1257603 lncRNA upstream 251027 71694464 ~ 71694700 (+) True G1106049
TU1257537 lncRNA upstream 368420 71573714 ~ 71577307 (+) True G1105987
TU1257527 lncRNA upstream 386495 71558430 ~ 71559232 (+) True G1105982
TU1257525 lncRNA upstream 388631 71556873 ~ 71557096 (+) True G1105980
TU1257810 lncRNA downstream 68709 72016045 ~ 72016353 (+) False LOC110538241
TU1257811 lncRNA downstream 69989 72017325 ~ 72017542 (+) True G1106236
TU1259751 lncRNA downstream 101170 72048506 ~ 72048709 (+) True G1107977
TU1259768 lncRNA downstream 125055 72072391 ~ 72072747 (+) True G1107994
TU1259774 lncRNA downstream 133699 72081035 ~ 72081346 (+) True G1108000
XM_021624931.2 mRNA upstream 2923 71941515 ~ 71942804 (+) False psmg3
XM_021624932.2 mRNA upstream 2923 71941522 ~ 71942804 (+) False psmg3
XM_021624928.2 mRNA upstream 290001 71648593 ~ 71655726 (+) True mrm2
XM_036938294.1 mRNA upstream 299330 71631816 ~ 71646397 (+) True LOC110538233
XM_036938295.1 mRNA upstream 301025 71631595 ~ 71644702 (+) False LOC110538233
XM_021624933.2 mRNA downstream 894 71948230 ~ 71965656 (+) True tmem184a
XR_005035132.1 mRNA downstream 42543 71989879 ~ 72008243 (+) False LOC110538240
XM_021624936.2 mRNA downstream 42543 71989879 ~ 72010628 (+) False LOC110538240
XM_021624935.2 mRNA downstream 42543 71989879 ~ 72010860 (+) True LOC110538240
XM_021624938.2 mRNA downstream 68927 72016263 ~ 72019145 (+) False LOC110538241
TU1257763 other upstream 2928 71941551 ~ 71942799 (+) True psmg3
TU1257166 other upstream 1039298 70902905 ~ 70906429 (+) False G1105655
TU1257167 other upstream 1039298 70902905 ~ 70906429 (+) False G1105655
TU1257168 other upstream 1039298 70902905 ~ 70906429 (+) True G1105655
TU1256950 other upstream 1311756 70612303 ~ 70633971 (+) True G1105467
TU1257805 other downstream 70257 72017593 ~ 72018290 (+) True LOC110538241
TU1261422 other downstream 1358089 73305425 ~ 73306154 (+) True G1109505
TU1261395 other downstream 1437472 73384808 ~ 73385867 (+) True LOC110538462
TU1261764 other downstream 1886307 73833643 ~ 73834606 (+) True G1109778
TU1261780 other downstream 1898919 73846255 ~ 73846794 (+) True G1109786

Expression Profile